JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR5M11_chr11_56537340_56548257	0/0	a0008	305	1	1	0	0	0	0	copy fasta	OR5M11	chr11	56537340	56548257
OR5M11_chr11_56537340_56548257	0/0	a0009	125	1	1	0	0	0	0	copy fasta	OR5M11	chr11	56537340	56548257
OR5M1_chr11_56604236_56619874	0/0	a0001	315	171	27	33	87	2	22	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	1/1	a0002	315	133	50	20	38	9	14	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	a0003	160	65	2	8	44	3	8	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	a0004	315	5	5	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	a0005	315	4	4	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	a0006	315	3	3	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	a0007	315	1	1	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	a0008	315	1	0	1	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	a0009	315	1	0	0	1	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	a0010	315	1	1	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	a0011	315	1	1	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M3_chr11_56464274_56478352	1/1	a0001	307	364	83	62	173	9	35	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	a0002	307	61	2	12	35	3	9	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	a0003	307	9	0	0	9	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	a0004	307	5	1	2	0	2	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	a0005	307	4	4	0	0	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	a0006	307	3	3	0	0	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	a0007	307	2	0	0	2	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	a0008	307	2	2	0	0	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	a0009	307	1	0	0	1	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	a0010	307	1	1	0	0	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M8_chr11_56485435_56496370	1/1	a0001	311	420	87	71	204	12	44	copy fasta	OR5M8	chr11	56485435	56496370
OR5M8_chr11_56485435_56496370	0/0	a0002	311	3	3	0	0	0	0	copy fasta	OR5M8	chr11	56485435	56496370
OR5M8_chr11_56485435_56496370	0/0	a0003	311	2	0	0	2	0	0	copy fasta	OR5M8	chr11	56485435	56496370
OR5M8_chr11_56485435_56496370	0/0	a0004	311	2	1	1	0	0	0	copy fasta	OR5M8	chr11	56485435	56496370
OR5M8_chr11_56485435_56496370	0/0	a0005	311	1	0	0	1	0	0	copy fasta	OR5M8	chr11	56485435	56496370
OR5M8_chr11_56485435_56496370	0/0	a0006	311	1	0	0	1	0	0	copy fasta	OR5M8	chr11	56485435	56496370
OR5M8_chr11_56485435_56496370	0/0	a0007	311	1	0	1	0	0	0	copy fasta	OR5M8	chr11	56485435	56496370
OR5M8_chr11_56485435_56496370	0/0	a0008	311	1	1	0	0	0	0	copy fasta	OR5M8	chr11	56485435	56496370
OR5M8_chr11_56485435_56496370	0/0	a0009	311	1	0	1	0	0	0	copy fasta	OR5M8	chr11	56485435	56496370
OR5M9_chr11_56457469_56468401	1/1	a0001	310	416	72	69	215	14	44	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	a0002	310	7	7	0	0	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	a0003	310	7	7	0	0	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	a0004	310	4	0	2	0	2	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	a0005	310	3	3	0	0	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	a0006	310	3	3	0	0	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	a0007	310	2	0	0	2	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	a0008	310	2	2	0	0	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	a0009	310	1	0	0	1	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	a0010	310	1	0	0	0	0	1	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	a0011	310	1	0	0	1	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	a0012	310	1	0	0	1	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	a0013	310	1	0	0	0	0	1	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	a0014	310	1	1	0	0	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	a0015	310	1	1	0	0	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	a0016	310	1	0	1	0	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5P2_chr11_7790974_7801942	0/0	a0001	322	214	16	41	128	8	21	copy fasta	OR5P2	chr11	7790974	7801942
OR5P2_chr11_7790974_7801942	0/1	a0002	329	72	12	17	25	6	11	copy fasta	OR5P2	chr11	7790974	7801942