JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR5P2_chr11_7790974_7801942	0/0	a0003	322	17	5	5	6	0	1	copy fasta	OR5P2	chr11	7790974	7801942
OR5P2_chr11_7790974_7801942	0/0	a0004	322	3	3	0	0	0	0	copy fasta	OR5P2	chr11	7790974	7801942
OR5P2_chr11_7790974_7801942	0/0	a0005	329	1	0	0	0	0	1	copy fasta	OR5P2	chr11	7790974	7801942
OR5P2_chr11_7790974_7801942	0/0	a0006	322	1	0	0	1	0	0	copy fasta	OR5P2	chr11	7790974	7801942
OR5P2_chr11_7790974_7801942	0/0	a0007	318	1	0	1	0	0	0	copy fasta	OR5P2	chr11	7790974	7801942
OR5P2_chr11_7790974_7801942	0/0	a0008	322	1	1	0	0	0	0	copy fasta	OR5P2	chr11	7790974	7801942
OR5P2_chr11_7790974_7801942	0/0	a0009	138	1	1	0	0	0	0	copy fasta	OR5P2	chr11	7790974	7801942
OR5P3_chr11_7819818_7835840	0/0	a0000	0	12	12	0	0	0	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	a0001	311	379	73	63	189	12	42	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	a0002	311	14	6	2	2	0	4	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	a0003	310	6	0	0	6	0	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	a0004	311	4	0	2	0	2	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	a0005	311	3	2	1	0	0	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	a0006	311	2	2	0	0	0	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	a0007	311	1	0	0	1	0	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	a0008	311	1	1	0	0	0	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5T1_chr11_56269154_56281819	0/1	a0001	326	186	67	30	66	7	15	copy fasta	OR5T1	chr11	56269154	56281819
OR5T1_chr11_56269154_56281819	0/0	a0002	326	185	20	34	105	7	19	copy fasta	OR5T1	chr11	56269154	56281819
OR5T1_chr11_56269154_56281819	0/0	a0003	326	4	4	0	0	0	0	copy fasta	OR5T1	chr11	56269154	56281819
OR5T1_chr11_56269154_56281819	0/0	a0004	65	1	0	0	1	0	0	copy fasta	OR5T1	chr11	56269154	56281819
OR5T1_chr11_56269154_56281819	0/0	a0005	326	1	0	0	1	0	0	copy fasta	OR5T1	chr11	56269154	56281819
OR5T1_chr11_56269154_56281819	0/0	a0006	326	1	0	0	1	0	0	copy fasta	OR5T1	chr11	56269154	56281819
OR5T1_chr11_56269154_56281819	0/0	a0007	326	1	1	0	0	0	0	copy fasta	OR5T1	chr11	56269154	56281819
OR5T2_chr11_56226282_56239255	0/0	a0001	318	349	62	57	178	14	38	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/1	a0002	318	42	8	4	24	0	5	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	a0003	318	27	15	10	0	1	1	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	a0004	318	7	6	1	0	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	a0005	318	6	0	4	0	1	1	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	a0006	318	5	1	2	0	2	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	a0007	318	5	5	0	0	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	a0008	318	1	0	0	1	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	a0009	318	1	0	0	1	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	a0010	318	1	0	0	1	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	a0011	318	1	0	0	0	0	1	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	a0012	318	1	1	0	0	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	a0013	318	1	0	0	1	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T3_chr11_56247254_56258222	0/1	a0001	322	302	77	57	126	8	33	copy fasta	OR5T3	chr11	56247254	56258222
OR5T3_chr11_56247254_56258222	0/0	a0002	322	27	0	1	26	0	0	copy fasta	OR5T3	chr11	56247254	56258222
OR5T3_chr11_56247254_56258222	0/0	a0003	322	19	0	0	18	0	1	copy fasta	OR5T3	chr11	56247254	56258222
OR5T3_chr11_56247254_56258222	0/0	a0004	322	8	4	2	0	2	0	copy fasta	OR5T3	chr11	56247254	56258222
OR5T3_chr11_56247254_56258222	0/0	a0005	322	6	5	1	0	0	0	copy fasta	OR5T3	chr11	56247254	56258222
OR5T3_chr11_56247254_56258222	0/0	a0006	322	5	5	0	0	0	0	copy fasta	OR5T3	chr11	56247254	56258222
OR5T3_chr11_56247254_56258222	0/0	a0007	181	4	3	1	0	0	0	copy fasta	OR5T3	chr11	56247254	56258222
OR5V1_chr6_29348749_29373865	0/1	a0001	321	257	63	46	109	11	27	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	a0002	321	122	15	18	69	3	17	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	a0003	321	23	15	7	1	0	0	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	a0004	321	19	0	1	18	0	0	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	a0005	321	2	0	2	0	0	0	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	a0006	321	2	2	0	0	0	0	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	a0007	321	1	1	0	0	0	0	copy fasta	OR5V1	chr6	29348749	29373865