JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR5V1_chr6_29348749_29373865	0/0	a0008	321	1	0	0	1	0	0	copy fasta	OR5V1	chr6	29348749	29373865
OR5W2_chr11_55908650_55919582	0/0	a0001	310	342	76	57	158	13	38	copy fasta	OR5W2	chr11	55908650	55919582
OR5W2_chr11_55908650_55919582	0/1	a0002	310	42	6	5	26	0	4	copy fasta	OR5W2	chr11	55908650	55919582
OR5W2_chr11_55908650_55919582	0/0	a0003	310	37	8	4	18	3	4	copy fasta	OR5W2	chr11	55908650	55919582
OR5W2_chr11_55908650_55919582	0/0	a0004	310	5	0	0	5	0	0	copy fasta	OR5W2	chr11	55908650	55919582
OR5W2_chr11_55908650_55919582	0/0	a0005	310	5	1	2	0	2	0	copy fasta	OR5W2	chr11	55908650	55919582
OR5W2_chr11_55908650_55919582	1/0	a0006	310	2	1	0	0	0	0	copy fasta	OR5W2	chr11	55908650	55919582
OR5W2_chr11_55908650_55919582	0/0	a0007	310	1	1	0	0	0	0	copy fasta	OR5W2	chr11	55908650	55919582
OR5W2_chr11_55908650_55919582	0/0	a0008	310	1	0	0	1	0	0	copy fasta	OR5W2	chr11	55908650	55919582
OR5W2_chr11_55908650_55919582	0/0	a0009	310	1	1	0	0	0	0	copy fasta	OR5W2	chr11	55908650	55919582
OR6A2_chr11_6786736_6804689	1/1	a0001	327	289	58	57	138	10	24	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	a0002	327	152	22	22	88	4	16	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	a0003	327	6	0	3	0	0	3	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	a0004	327	3	3	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	a0005	327	3	3	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	a0006	327	2	2	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	a0007	327	2	2	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	a0008	327	1	0	0	0	0	1	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	a0009	327	1	1	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	a0010	327	1	1	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6B1_chr7_143995320_144013793	1/1	a0001	311	305	63	49	136	15	40	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	a0002	311	86	6	20	53	1	6	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	a0003	311	13	0	9	4	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	a0004	311	11	11	0	0	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	a0005	311	1	0	0	1	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B2_chr2_240024491_240035429	1/0	a0001	312	291	64	56	128	9	33	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/1	a0002	312	126	5	24	79	8	9	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	a0003	312	14	14	0	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	a0004	312	10	0	0	6	0	4	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	a0005	312	5	4	1	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	a0006	312	4	4	0	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	a0007	312	2	0	0	2	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	a0008	312	1	0	0	0	0	1	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	a0009	312	1	0	0	1	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	a0010	312	1	1	0	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	a0011	312	1	1	0	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	a0012	312	1	1	0	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	a0013	312	1	0	1	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	a0014	312	1	0	0	0	0	1	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	a0015	312	1	0	0	0	1	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	a0016	312	1	1	0	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	a0017	312	1	0	0	1	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	a0018	312	1	1	0	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	a0019	254	1	0	0	1	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B3_chr2_240039571_240058521	0/0	a0001	331	149	21	18	94	7	9	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	1/1	a0002	331	141	20	37	59	7	16	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	a0003	331	81	26	15	20	4	16	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	a0004	331	57	21	6	24	0	6	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	a0005	331	3	3	0	0	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	a0006	331	2	0	0	2	0	0	copy fasta	OR6B3	chr2	240039571	240058521