JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR6B3_chr2_240039571_240058521	0/0	a0007	331	2	0	0	2	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	a0008	331	2	2	0	0	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	a0009	331	1	0	0	1	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	a0010	331	1	1	0	0	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	a0011	331	1	0	0	1	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	a0012	331	1	1	0	0	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	a0013	331	1	0	0	1	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	a0014	331	1	0	0	0	0	1	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	a0015	331	1	1	0	0	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6C1_chr12_55309343_55327364	0/0	a0001	312	176	36	24	99	5	12	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	a0002	17	172	25	35	90	7	15	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	1/1	a0003	312	82	10	15	40	2	13	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	a0004	312	37	24	6	0	3	4	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	a0005	312	3	3	0	0	0	0	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	a0006	312	2	2	0	0	0	0	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	a0007	312	1	0	0	0	1	0	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	a0008	312	1	0	0	1	0	0	copy fasta	OR6C1	chr12	55309343	55327364
OR6C2_chr12_55439076_55458347	1/1	a0001	312	369	57	74	183	12	41	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	a0002	312	30	17	6	0	2	5	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	a0003	312	22	0	0	22	0	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	a0004	312	16	16	0	0	0	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	a0005	312	10	7	1	0	0	2	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	a0006	312	3	3	0	0	0	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	a0007	312	1	0	0	1	0	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	a0008	312	1	0	1	0	0	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	a0009	312	1	0	0	0	1	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	a0010	312	1	0	0	0	1	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C3_chr12_55325746_55337636	1/1	a0001	311	375	60	71	191	13	38	copy fasta	OR6C3	chr12	55325746	55337636
OR6C3_chr12_55325746_55337636	0/0	a0002	311	37	25	6	0	3	3	copy fasta	OR6C3	chr12	55325746	55337636
OR6C3_chr12_55325746_55337636	0/0	a0003	311	15	0	0	14	0	1	copy fasta	OR6C3	chr12	55325746	55337636
OR6C3_chr12_55325746_55337636	0/0	a0004	311	13	8	3	0	0	2	copy fasta	OR6C3	chr12	55325746	55337636
OR6C3_chr12_55325746_55337636	0/0	a0005	311	3	3	0	0	0	0	copy fasta	OR6C3	chr12	55325746	55337636
OR6C3_chr12_55325746_55337636	0/0	a0006	311	2	2	0	0	0	0	copy fasta	OR6C3	chr12	55325746	55337636
OR6C3_chr12_55325746_55337636	0/0	a0007	181	1	0	0	1	0	0	copy fasta	OR6C3	chr12	55325746	55337636
OR6C3_chr12_55325746_55337636	0/0	a0008	311	1	0	1	0	0	0	copy fasta	OR6C3	chr12	55325746	55337636
OR6C3_chr12_55325746_55337636	0/0	a0009	311	1	0	0	1	0	0	copy fasta	OR6C3	chr12	55325746	55337636
OR6C3_chr12_55325746_55337636	0/0	a0010	311	1	0	0	1	0	0	copy fasta	OR6C3	chr12	55325746	55337636
OR6C3_chr12_55325746_55337636	0/0	a0011	311	1	0	1	0	0	0	copy fasta	OR6C3	chr12	55325746	55337636
OR6C4_chr12_55544602_55560832	0/1	a0001	309	364	65	73	169	14	42	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	a0002	309	33	14	1	18	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	a0003	193	11	11	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	a0004	193	8	6	2	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	1/0	a0005	309	2	1	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	a0006	309	1	0	0	1	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	a0007	309	1	0	0	1	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	a0008	309	1	0	0	1	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	a0009	309	1	1	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C65_chr12_55395529_55406467	0/1	a0001	312	336	38	63	183	12	39	copy fasta	OR6C65	chr12	55395529	55406467
OR6C65_chr12_55395529_55406467	1/0	a0002	312	91	54	9	16	4	7	copy fasta	OR6C65	chr12	55395529	55406467
OR6C65_chr12_55395529_55406467	0/0	a0003	312	2	0	2	0	0	0	copy fasta	OR6C65	chr12	55395529	55406467