JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR6C65_chr12_55395529_55406467	0/0	a0004	312	1	1	0	0	0	0	copy fasta	OR6C65	chr12	55395529	55406467
OR6C65_chr12_55395529_55406467	0/0	a0005	312	1	1	0	0	0	0	copy fasta	OR6C65	chr12	55395529	55406467
OR6C65_chr12_55395529_55406467	0/0	a0006	312	1	0	0	1	0	0	copy fasta	OR6C65	chr12	55395529	55406467
OR6C68_chr12_55487378_55498316	0/0	a0001	312	164	23	23	103	5	10	copy fasta	OR6C68	chr12	55487378	55498316
OR6C68_chr12_55487378_55498316	0/0	a0002	312	138	4	40	73	6	15	copy fasta	OR6C68	chr12	55487378	55498316
OR6C68_chr12_55487378_55498316	1/1	a0003	312	127	44	21	31	7	22	copy fasta	OR6C68	chr12	55487378	55498316
OR6C68_chr12_55487378_55498316	0/0	a0004	312	26	23	3	0	0	0	copy fasta	OR6C68	chr12	55487378	55498316
OR6C68_chr12_55487378_55498316	0/0	a0005	312	12	0	0	11	0	1	copy fasta	OR6C68	chr12	55487378	55498316
OR6C68_chr12_55487378_55498316	0/0	a0006	312	4	4	0	0	0	0	copy fasta	OR6C68	chr12	55487378	55498316
OR6C68_chr12_55487378_55498316	0/0	a0007	312	2	2	0	0	0	0	copy fasta	OR6C68	chr12	55487378	55498316
OR6C68_chr12_55487378_55498316	0/0	a0008	312	1	0	1	0	0	0	copy fasta	OR6C68	chr12	55487378	55498316
OR6C6_chr12_55288988_55301569	1/1	a0001	314	420	65	74	219	18	42	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	a0002	314	16	14	2	0	0	0	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	a0003	314	14	2	6	4	0	2	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	a0004	314	13	0	0	13	0	0	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	a0005	314	12	11	1	0	0	0	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	a0006	199	4	4	0	0	0	0	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	a0007	314	1	1	0	0	0	0	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	a0008	314	1	0	1	0	0	0	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	a0009	314	1	1	0	0	0	0	copy fasta	OR6C6	chr12	55288988	55301569
OR6C70_chr12_55464200_55475138	0/0	a0001	312	219	69	48	72	10	20	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	a0002	312	131	19	18	81	5	8	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	1/1	a0003	312	65	3	12	31	3	14	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	a0004	312	16	0	0	15	0	1	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	a0005	312	3	3	0	0	0	0	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	a0006	312	3	0	0	3	0	0	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	a0007	312	2	0	0	2	0	0	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	a0008	312	1	0	0	0	0	1	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	a0009	140	1	0	0	1	0	0	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	a0010	312	1	0	0	1	0	0	copy fasta	OR6C70	chr12	55464200	55475138
OR6C74_chr12_55239609_55261625	1/0	a0001	312	234	57	44	93	11	28	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/1	a0002	61	70	13	20	21	3	12	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	a0003	312	20	18	2	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	a0004	312	6	0	0	6	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	a0005	61	5	0	0	5	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	a0006	312	5	0	0	5	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C75_chr12_55357975_55374279	1/1	a0001	312	426	93	74	196	18	43	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	a0002	106	16	0	0	15	0	1	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	a0003	312	3	3	0	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	a0004	312	3	0	0	3	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	a0005	312	2	0	2	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	a0006	312	1	0	0	1	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	a0007	312	1	0	0	1	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	a0008	312	1	1	0	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	a0009	312	1	1	0	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C76_chr12_55421254_55432192	0/1	a0000	0	65	5	13	29	3	14	copy fasta	OR6C76	chr12	55421254	55432192
OR6C76_chr12_55421254_55432192	1/0	a0001	312	357	79	64	167	14	32	copy fasta	OR6C76	chr12	55421254	55432192
OR6C76_chr12_55421254_55432192	0/0	a0002	298	6	4	0	0	0	2	copy fasta	OR6C76	chr12	55421254	55432192
OR6C76_chr12_55421254_55432192	0/0	a0003	312	3	3	0	0	0	0	copy fasta	OR6C76	chr12	55421254	55432192
OR6C76_chr12_55421254_55432192	0/0	a0004	312	3	3	0	0	0	0	copy fasta	OR6C76	chr12	55421254	55432192