JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR6C76_chr12_55421254_55432192	0/0	a0005	312	2	0	2	0	0	0	copy fasta	OR6C76	chr12	55421254	55432192
OR6C76_chr12_55421254_55432192	0/0	a0006	312	2	2	0	0	0	0	copy fasta	OR6C76	chr12	55421254	55432192
OR6C76_chr12_55421254_55432192	0/0	a0007	312	1	0	1	0	0	0	copy fasta	OR6C76	chr12	55421254	55432192
OR6C76_chr12_55421254_55432192	0/0	a0008	312	1	0	0	0	1	0	copy fasta	OR6C76	chr12	55421254	55432192
OR6F1_chr1_247706436_247721646	1/1	a0001	308	198	22	36	106	10	22	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	a0002	308	113	21	15	61	3	13	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	a0003	308	34	27	6	0	0	1	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	a0004	308	7	3	3	0	0	1	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	a0005	308	6	4	2	0	0	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	a0006	308	6	6	0	0	0	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	a0007	308	3	0	2	0	1	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	a0008	308	2	0	0	1	0	1	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	a0009	308	1	1	0	0	0	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	a0010	308	1	1	0	0	0	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	a0011	308	1	0	0	1	0	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	a0012	308	1	0	0	1	0	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	a0013	308	1	1	0	0	0	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6J1_chr14_22625929_22649352	0/0	a0000	0	1	1	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/1	a0001	347	150	4	31	84	5	25	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	1/0	a0002	347	135	51	29	39	4	11	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	a0003	347	45	20	8	12	1	4	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	a0004	347	7	7	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	a0005	347	4	1	1	0	2	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	a0006	347	4	4	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	a0007	347	4	1	0	0	1	2	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	a0008	347	2	0	1	0	1	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	a0009	347	2	0	0	0	0	2	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	a0010	347	2	0	1	0	1	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	a0011	347	1	0	1	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	a0012	347	1	0	0	1	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	a0013	347	1	1	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	a0014	347	1	0	0	0	1	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	a0015	347	1	0	0	1	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	a0016	347	1	0	0	1	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6K2_chr1_158694678_158705652	1/1	a0001	324	406	56	85	201	16	46	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	a0002	324	15	0	0	15	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	a0003	324	11	11	0	0	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	a0004	324	10	9	1	0	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	a0005	324	7	7	0	0	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	a0006	156	5	5	0	0	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	a0007	324	3	3	0	0	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	a0008	324	2	2	0	0	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	a0009	324	1	1	0	0	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	a0010	324	1	0	0	1	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	a0011	324	1	0	0	1	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K3_chr1_158711327_158725720	1/1	a0001	315	182	24	36	90	3	27	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	a0002	315	127	6	32	79	5	5	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	a0003	315	78	13	9	35	8	13	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	a0004	315	18	18	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	a0005	315	12	11	1	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720