JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR6K3_chr1_158711327_158725720	0/0	a0006	315	11	11	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	a0007	315	2	2	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	a0008	315	2	2	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	a0009	315	2	2	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	a0010	315	1	0	0	1	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	a0011	315	1	0	0	0	0	1	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	a0012	315	1	1	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	a0013	315	1	1	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	a0014	315	1	0	0	1	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	a0015	315	1	1	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K6_chr1_158749720_158760891	1/1	a0001	319	386	67	69	192	12	44	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	a0002	319	50	4	12	28	4	2	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	a0003	319	14	13	1	0	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	a0004	319	12	12	0	0	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	a0005	319	1	1	0	0	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	a0006	319	1	0	0	1	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	a0007	319	1	1	0	0	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	a0008	319	1	0	0	1	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	a0009	319	1	0	0	1	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	a0010	319	1	0	0	1	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6M1_chr11_123800408_123811349	1/0	a0001	313	297	73	45	145	9	24	copy fasta	OR6M1	chr11	123800408	123811349
OR6M1_chr11_123800408_123811349	0/0	a0002	313	104	5	24	62	4	9	copy fasta	OR6M1	chr11	123800408	123811349
OR6M1_chr11_123800408_123811349	0/1	a0003	313	52	6	11	21	3	10	copy fasta	OR6M1	chr11	123800408	123811349
OR6M1_chr11_123800408_123811349	0/0	a0004	313	8	6	2	0	0	0	copy fasta	OR6M1	chr11	123800408	123811349
OR6M1_chr11_123800408_123811349	0/0	a0005	313	5	0	2	0	0	3	copy fasta	OR6M1	chr11	123800408	123811349
OR6M1_chr11_123800408_123811349	0/0	a0006	313	2	2	0	0	0	0	copy fasta	OR6M1	chr11	123800408	123811349
OR6M1_chr11_123800408_123811349	0/0	a0007	313	1	0	0	1	0	0	copy fasta	OR6M1	chr11	123800408	123811349
OR6M1_chr11_123800408_123811349	0/0	a0008	313	1	1	0	0	0	0	copy fasta	OR6M1	chr11	123800408	123811349
OR6M1_chr11_123800408_123811349	0/0	a0009	313	1	1	0	0	0	0	copy fasta	OR6M1	chr11	123800408	123811349
OR6M1_chr11_123800408_123811349	0/0	a0010	313	1	0	0	1	0	0	copy fasta	OR6M1	chr11	123800408	123811349
OR6N1_chr1_158759236_158777195	1/1	a0001	312	171	24	32	89	6	18	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	a0002	312	151	61	26	50	2	12	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	a0003	312	134	2	22	94	4	12	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	a0004	312	6	5	0	0	0	1	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	a0005	312	3	3	0	0	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	a0006	312	2	0	0	2	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	a0007	312	1	0	0	0	0	1	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	a0008	312	1	0	0	0	1	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	a0009	312	1	1	0	0	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	a0010	312	1	0	0	1	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	a0011	312	1	0	0	0	1	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N2_chr1_158769222_158786204	1/1	a0001	317	356	72	84	157	14	27	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	a0002	317	89	24	2	48	0	15	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	a0003	317	9	0	0	9	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	a0004	317	1	0	1	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	a0005	317	1	0	0	1	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	a0006	317	1	0	0	1	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	a0007	317	1	0	1	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6P1_chr1_158555606_158575580	1/1	a0001	317	396	77	72	195	13	37	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	a0002	317	6	6	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580