JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR7C1_chr19_14793515_14840185	0/0	a0005	320	11	11	0	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	a0006	320	10	9	1	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	a0007	319	8	7	1	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	a0008	320	7	0	0	2	0	5	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	a0009	320	1	1	0	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	a0010	320	1	0	0	0	1	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	a0011	320	1	0	0	0	0	1	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	a0012	320	1	1	0	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	a0013	320	1	1	0	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C2_chr19_14936489_14947448	0/1	a0001	320	412	81	74	195	15	46	copy fasta	OR7C2	chr19	14936489	14947448
OR7C2_chr19_14936489_14947448	0/0	a0002	320	10	8	1	0	1	0	copy fasta	OR7C2	chr19	14936489	14947448
OR7C2_chr19_14936489_14947448	0/0	a0003	320	4	0	0	4	0	0	copy fasta	OR7C2	chr19	14936489	14947448
OR7C2_chr19_14936489_14947448	0/0	a0004	320	3	3	0	0	0	0	copy fasta	OR7C2	chr19	14936489	14947448
OR7C2_chr19_14936489_14947448	1/0	a0005	319	3	0	2	0	0	0	copy fasta	OR7C2	chr19	14936489	14947448
OR7C2_chr19_14936489_14947448	0/0	a0006	320	2	2	0	0	0	0	copy fasta	OR7C2	chr19	14936489	14947448
OR7C2_chr19_14936489_14947448	0/0	a0007	320	1	0	1	0	0	0	copy fasta	OR7C2	chr19	14936489	14947448
OR7C2_chr19_14936489_14947448	0/0	a0008	320	1	0	0	1	0	0	copy fasta	OR7C2	chr19	14936489	14947448
OR7D2_chr19_9173979_9193818	1/1	a0001	312	369	87	75	148	16	41	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	a0002	312	15	0	0	15	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	a0003	312	5	5	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	a0004	312	4	4	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	a0005	312	3	0	0	3	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	a0006	312	1	0	1	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	a0007	306	1	0	0	0	0	1	copy fasta	OR7D2	chr19	9173979	9193818
OR7D4_chr19_9205276_9224589	1/1	a0001	312	334	76	60	147	9	40	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	a0002	312	78	4	11	52	7	4	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	a0003	312	10	8	2	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	a0004	312	6	6	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	a0005	312	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	a0006	312	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	a0007	312	1	0	1	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	a0008	312	1	0	0	1	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7E24_chr19_9245930_9257625	1/1	a0001	339	205	13	53	104	9	24	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	a0002	339	182	76	26	66	6	8	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	a0003	339	43	7	3	15	3	15	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	a0004	339	39	0	2	36	0	1	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	a0005	339	3	0	0	3	0	0	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	a0006	339	1	1	0	0	0	0	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	a0007	339	1	0	0	1	0	0	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	a0008	339	1	1	0	0	0	0	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	a0009	339	1	0	0	1	0	0	copy fasta	OR7E24	chr19	9245930	9257625
OR7G1_chr19_9109828_9120763	1/1	a0001	311	212	8	55	117	13	17	copy fasta	OR7G1	chr19	9109828	9120763
OR7G1_chr19_9109828_9120763	0/0	a0002	311	136	51	7	57	1	20	copy fasta	OR7G1	chr19	9109828	9120763
OR7G1_chr19_9109828_9120763	0/0	a0003	311	24	13	6	0	1	4	copy fasta	OR7G1	chr19	9109828	9120763
OR7G1_chr19_9109828_9120763	0/0	a0004	311	22	9	5	4	1	3	copy fasta	OR7G1	chr19	9109828	9120763
OR7G1_chr19_9109828_9120763	0/0	a0005	311	4	3	0	1	0	0	copy fasta	OR7G1	chr19	9109828	9120763
OR7G1_chr19_9109828_9120763	0/0	a0006	311	3	3	0	0	0	0	copy fasta	OR7G1	chr19	9109828	9120763
OR7G1_chr19_9109828_9120763	0/0	a0007	311	3	3	0	0	0	0	copy fasta	OR7G1	chr19	9109828	9120763
OR7G1_chr19_9109828_9120763	0/0	a0008	311	2	2	0	0	0	0	copy fasta	OR7G1	chr19	9109828	9120763
OR7G1_chr19_9109828_9120763	0/0	a0009	311	1	1	0	0	0	0	copy fasta	OR7G1	chr19	9109828	9120763