JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR7G1_chr19_9109828_9120763	0/0	a0010	311	1	0	0	1	0	0	copy fasta	OR7G1	chr19	9109828	9120763
OR7G1_chr19_9109828_9120763	0/0	a0011	311	1	1	0	0	0	0	copy fasta	OR7G1	chr19	9109828	9120763
OR7G1_chr19_9109828_9120763	0/0	a0012	311	1	0	1	0	0	0	copy fasta	OR7G1	chr19	9109828	9120763
OR7G2_chr19_9095407_9112475	0/0	a0001	324	244	66	47	91	10	30	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	a0002	324	152	7	25	101	5	14	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	a0003	324	20	3	9	3	1	4	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	a0004	324	15	14	1	0	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	a0005	324	8	8	0	0	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	a0006	324	1	1	0	0	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	a0007	324	1	0	0	1	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	a0008	324	1	1	0	0	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G3_chr19_9121012_9131950	0/0	a0000	0	136	48	14	51	2	21	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	1/1	a0001	312	217	22	56	100	15	22	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	0/0	a0002	244	26	12	7	3	1	3	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	0/0	a0003	219	10	1	0	9	0	0	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	0/0	a0004	121	5	5	0	0	0	0	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	0/0	a0005	219	5	5	0	0	0	0	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	0/0	a0006	312	1	0	0	1	0	0	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	0/0	a0007	312	1	1	0	0	0	0	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	0/0	a0008	312	1	0	1	0	0	0	copy fasta	OR7G3	chr19	9121012	9131950
OR8A1_chr11_124564997_124576374	0/0	a0001	309	265	67	29	145	6	18	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	a0002	309	102	5	14	61	5	17	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	1/1	a0003	309	66	7	21	16	7	13	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	a0004	309	8	7	1	0	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	a0005	309	3	3	0	0	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	a0006	309	3	3	0	0	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	a0007	309	2	2	0	0	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	a0008	309	1	1	0	0	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	a0009	309	1	1	0	0	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	a0010	309	1	0	1	0	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8B12_chr11_124537722_124548654	1/1	a0001	310	398	63	78	198	14	43	copy fasta	OR8B12	chr11	124537722	124548654
OR8B12_chr11_124537722_124548654	0/0	a0002	310	32	16	2	9	0	5	copy fasta	OR8B12	chr11	124537722	124548654
OR8B12_chr11_124537722_124548654	0/0	a0003	310	10	9	1	0	0	0	copy fasta	OR8B12	chr11	124537722	124548654
OR8B12_chr11_124537722_124548654	0/0	a0004	309	7	7	0	0	0	0	copy fasta	OR8B12	chr11	124537722	124548654
OR8B12_chr11_124537722_124548654	0/0	a0005	310	6	5	1	0	0	0	copy fasta	OR8B12	chr11	124537722	124548654
OR8B12_chr11_124537722_124548654	0/0	a0006	310	2	0	0	2	0	0	copy fasta	OR8B12	chr11	124537722	124548654
OR8B12_chr11_124537722_124548654	0/0	a0007	310	1	0	0	1	0	0	copy fasta	OR8B12	chr11	124537722	124548654
OR8B2_chr11_124377394_124389499	1/1	a0001	313	262	25	47	153	12	23	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	a0002	313	127	44	19	47	2	15	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	a0003	313	21	7	4	9	0	1	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	a0004	313	18	14	2	2	0	0	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	a0005	313	6	5	0	1	0	0	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	a0006	313	3	0	1	0	0	2	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	a0007	313	2	2	0	0	0	0	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	a0008	313	1	0	0	1	0	0	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	a0009	313	1	0	1	0	0	0	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	a0010	313	1	0	0	1	0	0	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	a0011	297	1	0	0	0	0	1	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	a0012	313	1	1	0	0	0	0	copy fasta	OR8B2	chr11	124377394	124389499
OR8B3_chr11_124390534_124404024	0/1	a0001	313	209	16	27	134	10	21	copy fasta	OR8B3	chr11	124390534	124404024