JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR8B3_chr11_124390534_124404024	0/0	a0002	313	122	35	19	46	2	20	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	1/0	a0003	313	53	7	19	24	1	1	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	a0004	313	36	19	6	10	0	1	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	a0005	205	11	0	5	0	1	5	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	a0006	313	8	8	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	a0007	313	3	3	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	a0008	313	3	0	0	3	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	a0009	313	2	2	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	a0010	313	1	1	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	a0011	313	1	1	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	a0012	313	1	1	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	a0013	313	1	0	0	1	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	a0014	313	1	1	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B4_chr11_124418942_124429871	0/0	a0001	309	175	27	19	114	3	12	copy fasta	OR8B4	chr11	124418942	124429871
OR8B4_chr11_124418942_124429871	1/1	a0002	309	137	22	32	51	10	20	copy fasta	OR8B4	chr11	124418942	124429871
OR8B4_chr11_124418942_124429871	0/0	a0003	309	72	26	12	32	1	1	copy fasta	OR8B4	chr11	124418942	124429871
OR8B4_chr11_124418942_124429871	0/0	a0004	309	22	7	7	2	2	4	copy fasta	OR8B4	chr11	124418942	124429871
OR8B4_chr11_124418942_124429871	0/0	a0005	309	11	10	1	0	0	0	copy fasta	OR8B4	chr11	124418942	124429871
OR8B4_chr11_124418942_124429871	0/0	a0006	309	4	0	0	4	0	0	copy fasta	OR8B4	chr11	124418942	124429871
OR8B4_chr11_124418942_124429871	0/0	a0007	309	3	0	1	0	0	2	copy fasta	OR8B4	chr11	124418942	124429871
OR8B4_chr11_124418942_124429871	0/0	a0008	309	1	0	0	0	0	1	copy fasta	OR8B4	chr11	124418942	124429871
OR8B4_chr11_124418942_124429871	0/0	a0009	309	1	0	0	1	0	0	copy fasta	OR8B4	chr11	124418942	124429871
OR8B8_chr11_124432445_124450696	1/1	a0001	311	414	95	76	180	16	45	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	a0002	311	3	0	0	3	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	a0003	311	1	1	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	a0004	311	1	0	0	0	0	1	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	a0005	311	1	0	0	1	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	a0006	311	1	1	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	a0007	311	1	1	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8D1_chr11_124297831_124318949	1/0	a0001	308	241	47	44	112	6	31	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/1	a0002	308	115	8	20	67	10	9	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	a0003	308	50	32	7	11	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	a0004	308	6	6	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	a0005	308	6	0	4	0	0	2	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	a0006	308	3	3	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	a0007	308	1	0	1	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	a0008	308	1	0	0	1	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	a0009	308	1	1	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	a0010	308	1	0	0	0	0	1	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	a0011	308	1	0	0	0	0	1	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	a0012	308	1	0	0	1	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	a0013	308	1	1	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D2_chr11_124314262_124325197	1/1	a0001	311	275	47	53	133	11	29	copy fasta	OR8D2	chr11	124314262	124325197
OR8D2_chr11_124314262_124325197	0/0	a0002	311	133	35	20	61	3	14	copy fasta	OR8D2	chr11	124314262	124325197
OR8D2_chr11_124314262_124325197	0/0	a0003	311	7	7	0	0	0	0	copy fasta	OR8D2	chr11	124314262	124325197
OR8D2_chr11_124314262_124325197	0/0	a0004	311	3	3	0	0	0	0	copy fasta	OR8D2	chr11	124314262	124325197
OR8D2_chr11_124314262_124325197	0/0	a0005	311	2	2	0	0	0	0	copy fasta	OR8D2	chr11	124314262	124325197
OR8D2_chr11_124314262_124325197	0/0	a0006	311	2	0	0	2	0	0	copy fasta	OR8D2	chr11	124314262	124325197
OR8D2_chr11_124314262_124325197	0/0	a0007	311	1	1	0	0	0	0	copy fasta	OR8D2	chr11	124314262	124325197
OR8D2_chr11_124314262_124325197	0/0	a0008	311	1	1	0	0	0	0	copy fasta	OR8D2	chr11	124314262	124325197