JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR8D2_chr11_124314262_124325197	0/0	a0009	311	1	0	1	0	0	0	copy fasta	OR8D2	chr11	124314262	124325197
OR8D2_chr11_124314262_124325197	0/0	a0010	311	1	0	0	0	0	1	copy fasta	OR8D2	chr11	124314262	124325197
OR8D4_chr11_123897167_123914229	0/1	a0001	314	116	7	25	64	3	16	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	a0002	314	96	11	27	53	2	3	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	a0003	314	84	21	8	39	4	12	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	1/0	a0004	314	81	11	13	41	4	11	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	a0005	314	30	16	3	11	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	a0006	314	12	3	5	0	1	3	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	a0007	314	9	9	0	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	a0008	110	8	7	1	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	a0009	314	6	0	0	6	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	a0010	314	2	2	0	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	a0011	314	2	0	0	2	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	a0012	314	1	1	0	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	a0013	314	1	0	0	1	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	a0014	314	1	0	0	1	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	a0015	314	1	0	0	0	0	1	copy fasta	OR8D4	chr11	123897167	123914229
OR8G1_chr11_124236095_124259364	0/0	a0001	258	209	60	32	87	5	25	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	1/1	a0002	311	192	15	38	111	13	13	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	a0003	311	17	11	0	6	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	a0004	82	7	7	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	a0005	311	3	3	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	a0006	258	1	0	1	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	a0007	311	1	0	1	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G5_chr11_124251376_124271224	1/0	a0001	311	171	47	34	66	5	18	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/1	a0002	311	128	15	17	82	3	10	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	a0003	311	46	19	1	21	0	5	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	a0004	311	45	1	18	23	1	2	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	a0005	311	20	3	5	11	0	1	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	a0006	311	6	6	0	0	0	0	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	a0007	311	5	5	0	0	0	0	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	a0008	311	5	0	1	1	3	0	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	a0009	311	3	0	0	3	0	0	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	a0010	311	1	1	0	0	0	0	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	a0011	311	1	1	0	0	0	0	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	a0012	311	1	0	0	1	0	0	copy fasta	OR8G5	chr11	124251376	124271224
OR8H1_chr11_56283462_56297254	0/1	a0001	311	392	86	65	192	9	39	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	a0002	311	45	1	10	24	5	5	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	a0003	311	8	4	2	0	2	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	a0004	311	2	2	0	0	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	a0005	311	1	0	0	1	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	a0006	311	1	1	0	0	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	a0007	311	1	1	0	0	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	a0008	311	1	0	0	1	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	a0009	311	1	1	0	0	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	a0010	311	1	0	0	1	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	a0011	311	1	0	1	0	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	a0012	311	1	0	0	1	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H2_chr11_56098687_56112658	0/0	a0001	312	334	51	58	180	12	33	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/1	a0002	312	76	13	7	43	3	9	copy fasta	OR8H2	chr11	56098687	56112658