Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARHGEF28_chr5_73621196_73946990	0/0	a0009	1705	4	0	2	0	1	1	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0010	1705	3	1	2	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0011	1705	3	2	0	0	0	1	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0012	1705	3	2	1	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0013	1705	3	0	1	0	0	2	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0014	1705	2	0	2	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0015	1705	2	0	1	1	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0016	1705	2	0	1	0	0	1	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0017	1705	2	0	0	1	0	1	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0018	1705	2	0	0	2	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0019	1705	2	0	2	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0020	1705	1	0	0	1	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0021	1705	1	0	0	0	0	1	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0022	1705	1	0	0	1	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0023	1705	1	0	0	1	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0024	1705	1	0	0	0	0	1	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0025	1705	1	0	0	0	1	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0026	1705	1	0	0	1	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0027	1705	1	0	0	1	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0028	1705	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0029	1705	1	0	0	1	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0030	1705	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0031	1705	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0032	1705	1	0	0	0	1	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0033	1705	1	0	0	1	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0034	1705	1	0	1	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0035	1705	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0036	1705	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0037	1705	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0038	1705	1	0	0	1	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0039	1705	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0040	1705	1	0	1	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0041	1705	1	0	0	1	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF2_chr1_155941854_155983547	1/1	a0001	986	275	82	50	95	12	34	copy fasta	ARHGEF2	chr1	155941854	155983547
ARHGEF2_chr1_155941854_155983547	0/0	a0002	986	5	5	0	0	0	0	copy fasta	ARHGEF2	chr1	155941854	155983547
ARHGEF2_chr1_155941854_155983547	0/0	a0003	986	3	0	0	3	0	0	copy fasta	ARHGEF2	chr1	155941854	155983547
ARHGEF2_chr1_155941854_155983547	0/0	a0004	986	1	1	0	0	0	0	copy fasta	ARHGEF2	chr1	155941854	155983547
ARHGEF33_chr2_38884875_38980454	0/1	a0001	870	231	79	47	72	4	28	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	1/0	a0002	870	35	1	3	23	0	7	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	a0003	870	3	0	2	0	0	1	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	a0004	870	2	0	2	0	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	a0005	870	1	1	0	0	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	a0006	870	1	0	0	1	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	a0007	870	1	1	0	0	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	a0008	870	1	0	1	0	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	a0009	870	1	0	0	1	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	a0010	870	1	0	1	0	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	a0011	870	1	0	0	1	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF35_chr7_144181083_144200833	0/0	a0001	484	220	9	28	147	5	31	copy fasta	ARHGEF35	chr7	144181083	144200833
ARHGEF35_chr7_144181083_144200833	1/0	a0002	484	127	47	27	33	5	14	copy fasta	ARHGEF35	chr7	144181083	144200833