JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR8H2_chr11_56098687_56112658	0/0	a0003	312	13	13	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	a0004	312	5	5	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	a0005	312	5	1	2	0	2	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	1/0	a0006	312	3	2	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	a0007	312	3	2	1	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	a0008	312	3	3	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	a0009	312	3	3	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	a0010	312	1	0	1	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	a0011	312	1	1	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	a0012	312	1	1	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	a0013	145	1	1	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	a0014	312	1	0	0	1	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	a0015	312	1	0	1	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	a0016	312	1	0	0	0	1	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H3_chr11_56117373_56128311	0/0	a0001	312	300	61	55	143	11	30	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	a0002	312	37	6	4	22	0	5	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	a0003	312	37	2	8	22	2	3	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	a0004	312	14	13	0	1	0	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	a0005	312	5	1	2	0	2	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	a0006	312	4	3	1	0	0	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	a0007	312	4	4	0	0	0	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	a0008	312	3	0	2	0	1	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	1/0	a0009	312	3	2	0	0	0	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	a0010	312	3	3	0	0	0	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	a0011	312	1	0	0	1	0	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	a0012	312	1	0	0	0	0	1	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	a0013	312	1	0	0	1	0	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	a0014	312	1	0	0	0	0	1	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	a0015	33	1	1	0	0	0	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8I2_chr11_56088308_56099240	1/1	a0001	310	432	80	73	215	16	46	copy fasta	OR8I2	chr11	56088308	56099240
OR8I2_chr11_56088308_56099240	0/0	a0002	310	11	10	1	0	0	0	copy fasta	OR8I2	chr11	56088308	56099240
OR8I2_chr11_56088308_56099240	0/0	a0003	177	8	4	2	0	2	0	copy fasta	OR8I2	chr11	56088308	56099240
OR8I2_chr11_56088308_56099240	0/0	a0004	310	2	0	2	0	0	0	copy fasta	OR8I2	chr11	56088308	56099240
OR8I2_chr11_56088308_56099240	0/0	a0005	310	1	1	0	0	0	0	copy fasta	OR8I2	chr11	56088308	56099240
OR8I2_chr11_56088308_56099240	0/0	a0006	310	1	1	0	0	0	0	copy fasta	OR8I2	chr11	56088308	56099240
OR8I2_chr11_56088308_56099240	0/0	a0007	310	1	1	0	0	0	0	copy fasta	OR8I2	chr11	56088308	56099240
OR8I2_chr11_56088308_56099240	0/0	a0008	310	1	1	0	0	0	0	copy fasta	OR8I2	chr11	56088308	56099240
OR8I2_chr11_56088308_56099240	0/0	a0009	281	1	0	0	1	0	0	copy fasta	OR8I2	chr11	56088308	56099240
OR8J1_chr11_56349291_56366511	0/0	a0001	316	317	67	49	157	11	33	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	a0002	316	83	17	17	36	3	10	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	a0003	316	5	1	2	0	2	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	a0004	316	3	0	2	0	0	1	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	a0005	316	3	3	0	0	0	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	a0006	316	2	0	0	2	0	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	a0007	316	1	1	0	0	0	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	a0008	148	1	1	0	0	0	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	a0009	316	1	0	0	1	0	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	a0010	316	1	0	0	1	0	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/1	a0011	316	1	0	0	0	0	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	a0012	316	1	0	0	1	0	0	copy fasta	OR8J1	chr11	56349291	56366511