JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR8J3_chr11_56129721_56145201	1/0	a0001	315	342	64	62	164	14	37	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/1	a0002	315	41	6	4	25	0	5	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	a0003	315	12	7	3	0	2	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	a0004	315	6	6	0	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	a0005	315	5	5	0	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	a0006	315	2	2	0	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	a0007	315	2	2	0	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	a0008	315	1	0	0	1	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	a0009	2	1	0	1	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8K1_chr11_56341039_56351998	0/1	a0001	2	351	79	56	167	13	35	copy fasta	OR8K1	chr11	56341039	56351998
OR8K1_chr11_56341039_56351998	0/0	a0002	319	86	17	18	39	3	9	copy fasta	OR8K1	chr11	56341039	56351998
OR8K3_chr11_56310144_56325639	0/1	a0001	312	311	70	53	150	9	28	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	a0002	312	80	15	18	34	3	10	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	a0003	312	10	7	1	0	2	0	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	a0004	259	4	1	2	0	0	1	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	a0005	312	1	1	0	0	0	0	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	a0006	312	1	1	0	0	0	0	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	a0007	312	1	0	0	1	0	0	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	a0008	312	1	0	0	1	0	0	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	a0009	312	1	1	0	0	0	0	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	a0010	312	1	0	0	0	0	1	copy fasta	OR8K3	chr11	56310144	56325639
OR8K5_chr11_56154394_56165317	1/1	a0001	307	386	79	63	180	16	46	copy fasta	OR8K5	chr11	56154394	56165317
OR8K5_chr11_56154394_56165317	0/0	a0002	307	29	0	6	23	0	0	copy fasta	OR8K5	chr11	56154394	56165317
OR8K5_chr11_56154394_56165317	0/0	a0003	307	8	4	2	0	2	0	copy fasta	OR8K5	chr11	56154394	56165317
OR8K5_chr11_56154394_56165317	0/0	a0004	307	6	5	1	0	0	0	copy fasta	OR8K5	chr11	56154394	56165317
OR8K5_chr11_56154394_56165317	0/0	a0005	307	2	2	0	0	0	0	copy fasta	OR8K5	chr11	56154394	56165317
OR8K5_chr11_56154394_56165317	0/0	a0006	307	1	0	0	1	0	0	copy fasta	OR8K5	chr11	56154394	56165317
OR8K5_chr11_56154394_56165317	0/0	a0007	307	1	0	0	1	0	0	copy fasta	OR8K5	chr11	56154394	56165317
OR8K5_chr11_56154394_56165317	0/0	a0008	307	1	1	0	0	0	0	copy fasta	OR8K5	chr11	56154394	56165317
OR8K5_chr11_56154394_56165317	0/0	a0009	307	1	1	0	0	0	0	copy fasta	OR8K5	chr11	56154394	56165317
OR8K5_chr11_56154394_56165317	0/0	a0010	307	1	0	0	1	0	0	copy fasta	OR8K5	chr11	56154394	56165317
OR8S1_chr12_48520632_48531570	0/0	a0001	312	177	34	31	101	2	9	copy fasta	OR8S1	chr12	48520632	48531570
OR8S1_chr12_48520632_48531570	0/0	a0002	312	106	33	15	43	4	11	copy fasta	OR8S1	chr12	48520632	48531570
OR8S1_chr12_48520632_48531570	0/1	a0003	312	85	1	19	46	7	11	copy fasta	OR8S1	chr12	48520632	48531570
OR8S1_chr12_48520632_48531570	1/0	a0004	312	34	14	6	7	3	3	copy fasta	OR8S1	chr12	48520632	48531570
OR8S1_chr12_48520632_48531570	0/0	a0005	312	32	2	11	12	2	5	copy fasta	OR8S1	chr12	48520632	48531570
OR8S1_chr12_48520632_48531570	0/0	a0006	312	5	3	2	0	0	0	copy fasta	OR8S1	chr12	48520632	48531570
OR8S1_chr12_48520632_48531570	0/0	a0007	312	2	2	0	0	0	0	copy fasta	OR8S1	chr12	48520632	48531570
OR8S1_chr12_48520632_48531570	0/0	a0008	312	1	0	0	1	0	0	copy fasta	OR8S1	chr12	48520632	48531570
OR8S1_chr12_48520632_48531570	0/0	a0009	312	1	1	0	0	0	0	copy fasta	OR8S1	chr12	48520632	48531570
OR8S1_chr12_48520632_48531570	0/0	a0010	312	1	0	0	0	0	1	copy fasta	OR8S1	chr12	48520632	48531570
OR8U1_chr11_56370624_56381553	0/0	a0001	319	156	23	27	80	6	20	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	a0002	319	105	33	20	37	5	10	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	1/1	a0003	309	41	8	2	23	0	6	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	a0004	319	38	10	5	16	3	4	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	a0005	319	16	15	1	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	a0006	309	2	0	2	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	a0007	319	2	2	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	a0008	319	1	1	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	a0009	319	1	0	1	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553