JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR8U1_chr11_56370624_56381553	0/0	a0010	319	1	1	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	a0011	319	1	1	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U3_chr11_56412258_56423232	0/0	a0001	324	230	24	43	128	10	25	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	a0002	324	101	33	20	37	3	8	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	1/1	a0003	324	45	8	4	25	0	6	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	a0004	324	41	12	5	16	3	5	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	a0005	324	5	1	2	0	2	0	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	a0006	324	5	5	0	0	0	0	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	a0007	324	3	3	0	0	0	0	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	a0008	324	3	0	0	3	0	0	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	a0009	324	2	2	0	0	0	0	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	a0010	324	2	2	0	0	0	0	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	a0011	324	2	2	0	0	0	0	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	a0012	324	1	1	0	0	0	0	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	a0013	324	1	0	0	1	0	0	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	a0014	324	1	1	0	0	0	0	copy fasta	OR8U3	chr11	56412258	56423232
OR9A2_chr7_143021200_143032132	0/1	a0001	310	291	86	41	113	14	36	copy fasta	OR9A2	chr7	143021200	143032132
OR9A2_chr7_143021200_143032132	0/0	a0002	310	26	11	4	9	0	2	copy fasta	OR9A2	chr7	143021200	143032132
OR9A2_chr7_143021200_143032132	0/0	a0003	310	1	1	0	0	0	0	copy fasta	OR9A2	chr7	143021200	143032132
OR9A2_chr7_143021200_143032132	0/0	a0004	310	1	0	0	0	0	1	copy fasta	OR9A2	chr7	143021200	143032132
OR9A2_chr7_143021200_143032132	0/0	a0005	310	1	0	1	0	0	0	copy fasta	OR9A2	chr7	143021200	143032132
OR9A2_chr7_143021200_143032132	0/0	a0006	310	1	0	0	0	0	1	copy fasta	OR9A2	chr7	143021200	143032132
OR9A4_chr7_141911399_141925625	1/1	a0001	314	438	90	79	202	16	49	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	a0002	314	2	2	0	0	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	a0003	314	2	2	0	0	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	a0004	314	1	0	0	1	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	a0005	314	1	0	0	1	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	a0006	314	1	0	1	0	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	a0007	314	1	0	0	0	0	1	copy fasta	OR9A4	chr7	141911399	141925625
OR9G1_chr11_56694095_56708884	0/0	a0001	305	254	24	55	138	12	25	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/1	a0002	305	54	18	5	24	0	6	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	a0003	305	48	25	1	19	0	3	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	a0004	305	30	14	9	4	2	1	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	a0005	305	10	10	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	a0006	305	9	1	3	0	4	1	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	1/0	a0007	305	3	2	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	a0008	305	1	0	0	0	0	1	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	a0009	305	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	a0010	305	1	0	1	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	a0011	305	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	a0012	305	1	0	0	0	0	1	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	a0013	305	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G4_chr11_56736223_56753697	0/0	a0001	312	323	68	54	165	11	25	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	a0002	312	63	11	15	24	6	7	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/1	a0003	312	42	10	4	22	1	4	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	a0004	312	5	5	0	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	a0005	312	1	1	0	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	a0006	312	1	0	0	1	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	a0007	312	1	0	1	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	a0008	312	1	1	0	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697