JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR9I1_chr11_58111742_58130530	1/1	a0001	314	384	82	76	168	16	40	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	a0002	314	19	0	0	19	0	0	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	a0003	314	2	0	0	2	0	0	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	a0004	314	1	0	0	0	0	1	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	a0005	314	1	0	0	0	0	1	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	a0006	314	1	1	0	0	0	0	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	a0007	314	1	0	0	1	0	0	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	a0008	314	1	1	0	0	0	0	copy fasta	OR9I1	chr11	58111742	58130530
OR9K2_chr12_55121406_55137750	0/0	a0000	0	2	0	0	0	2	0	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	1/0	a0001	313	251	47	61	109	9	24	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/1	a0002	313	110	44	21	24	5	15	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	a0003	313	4	0	0	3	0	1	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	a0004	313	1	1	0	0	0	0	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	a0005	313	1	0	0	0	0	1	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	a0006	313	1	0	0	0	0	1	copy fasta	OR9K2	chr12	55121406	55137750
OR9Q1_chr11_58018881_58186616	1/1	a0001	310	314	78	64	130	9	31	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	a0002	310	5	0	2	0	2	1	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	a0003	310	1	1	0	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	a0004	310	1	0	0	1	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	a0005	310	1	0	0	1	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	a0006	310	1	0	0	0	1	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	a0007	310	1	1	0	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q2_chr11_58184070_58199053	1/0	a0001	314	333	67	62	154	12	37	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/1	a0002	314	80	20	18	32	3	6	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	a0003	314	1	0	0	0	0	1	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	a0004	314	1	0	0	1	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	a0005	314	1	0	0	0	1	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	a0006	314	1	0	0	1	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	a0007	314	1	1	0	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
ORAI2_chr7_102428575_102461825	1/1	a0001	254	402	90	84	160	18	48	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	a0002	254	2	2	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI3_chr16_30944068_30959938	1/1	a0001	295	288	87	69	76	18	36	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/0	a0002	295	2	0	2	0	0	0	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/0	a0003	295	1	0	1	0	0	0	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/0	a0004	295	1	1	0	0	0	0	copy fasta	ORAI3	chr16	30944068	30959938
ORC1_chr1_52367829_52409423	1/1	a0001	861	245	75	37	94	10	27	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	a0002	861	27	0	4	23	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	a0003	861	14	14	0	0	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	a0004	861	3	1	2	0	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	a0005	861	3	3	0	0	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	a0006	861	2	2	0	0	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	a0007	861	1	0	0	0	1	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	a0008	861	1	0	1	0	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	a0009	861	1	0	0	0	1	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	a0010	861	1	0	1	0	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	a0011	861	1	0	1	0	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	a0012	861	1	1	0	0	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	a0013	861	1	0	0	0	0	1	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	a0014	861	1	0	1	0	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	a0015	861	1	0	1	0	0	0	copy fasta	ORC1	chr1	52367829	52409423