JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ORC1_chr1_52367829_52409423	0/0	a0016	861	1	0	0	1	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC2_chr2_200903977_200968660	1/1	a0001	577	146	76	34	14	8	12	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	a0002	577	1	1	0	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	a0003	577	1	1	0	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	a0004	577	1	1	0	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	a0005	577	1	1	0	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC3_chr6_87585135_87672451	1/1	a0001	711	357	82	69	152	14	38	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	a0002	711	9	1	3	3	1	1	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	a0003	711	4	4	0	0	0	0	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	a0004	711	2	0	0	2	0	0	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	a0005	711	1	1	0	0	0	0	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	a0006	711	1	0	0	0	1	0	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	a0007	711	1	0	0	0	0	1	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	a0008	711	1	0	0	1	0	0	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	a0009	711	1	1	0	0	0	0	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	a0010	711	1	1	0	0	0	0	copy fasta	ORC3	chr6	87585135	87672451
ORC4_chr2_147925396_148025737	1/1	a0001	436	194	61	31	74	5	21	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	a0002	436	132	20	31	58	6	17	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	a0003	436	7	2	2	0	3	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	a0004	436	2	0	0	2	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	a0005	436	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC5_chr7_104121341_104213013	1/1	a0001	435	360	82	72	144	16	44	copy fasta	ORC5	chr7	104121341	104213013
ORC5_chr7_104121341_104213013	0/0	a0002	435	4	4	0	0	0	0	copy fasta	ORC5	chr7	104121341	104213013
ORC5_chr7_104121341_104213013	0/0	a0003	435	1	0	0	1	0	0	copy fasta	ORC5	chr7	104121341	104213013
ORC5_chr7_104121341_104213013	0/0	a0004	435	1	0	0	1	0	0	copy fasta	ORC5	chr7	104121341	104213013
ORC6_chr16_46684659_46703394	1/1	a0001	252	368	78	66	164	12	46	copy fasta	ORC6	chr16	46684659	46703394
ORM1_chr9_114318098_114331479	0/0	a0000	0	3	1	0	1	1	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/1	a0001	201	318	57	56	168	8	28	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	1/0	a0002	201	127	31	23	45	9	18	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	a0003	201	5	1	3	1	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	a0004	201	4	4	0	0	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	a0005	201	2	1	1	0	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	a0006	201	2	0	0	2	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	a0007	201	1	0	1	0	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	a0008	201	1	0	0	1	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	a0009	201	1	1	0	0	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM2_chr9_114324869_114338251	0/1	a0000	0	2	1	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	1/0	a0001	201	372	33	81	193	18	46	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	a0002	201	28	26	2	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	a0003	201	20	20	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	a0004	201	8	0	0	8	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	a0005	201	6	6	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	a0006	201	3	0	0	3	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	a0007	201	2	1	1	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	a0008	201	1	1	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	a0009	201	1	1	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	a0010	82	1	1	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	a0011	201	1	1	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	a0012	201	1	1	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORMDL1_chr2_189765267_189789339	1/1	a0001	153	356	97	68	135	10	44	copy fasta	ORMDL1	chr2	189765267	189789339