JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ORMDL1_chr2_189765267_189789339	0/0	a0002	153	1	0	0	1	0	0	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL1_chr2_189765267_189789339	0/0	a0003	153	1	1	0	0	0	0	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL2_chr12_55813041_55826879	1/1	a0001	153	416	94	80	181	18	41	copy fasta	ORMDL2	chr12	55813041	55826879
ORMDL2_chr12_55813041_55826879	0/0	a0002	153	2	0	0	1	0	1	copy fasta	ORMDL2	chr12	55813041	55826879
ORMDL3_chr17_39916043_39932601	1/1	a0001	153	410	92	72	186	18	40	copy fasta	ORMDL3	chr17	39916043	39932601
OS9_chr12_57689132_57726557	1/1	a0001	667	338	93	64	123	14	42	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	a0002	667	6	0	0	6	0	0	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	a0003	667	3	2	1	0	0	0	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	a0004	667	1	1	0	0	0	0	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	a0005	598	1	0	0	1	0	0	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	a0006	667	1	0	1	0	0	0	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	a0007	667	1	0	1	0	0	0	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	a0008	667	1	0	1	0	0	0	copy fasta	OS9	chr12	57689132	57726557
OSBP2_chr22_30689874_30912813	1/0	a0001	916	254	68	52	87	15	31	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	a0002	916	3	0	2	0	0	1	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/1	a0003	916	3	0	1	0	0	1	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	a0004	916	2	0	1	0	1	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	a0005	916	2	0	0	0	0	2	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	a0006	916	1	0	0	1	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	a0007	916	1	0	0	0	0	1	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	a0008	916	1	0	0	1	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	a0009	916	1	0	0	1	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBPL10_chr3_31655825_31986262	1/1	a0001	764	107	57	21	11	6	10	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	a0002	764	59	4	12	32	4	7	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	a0003	13	17	7	3	6	0	1	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	a0004	764	1	1	0	0	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	a0005	764	1	1	0	0	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	a0006	764	1	0	0	1	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL11_chr3_125523858_125600497	1/1	a0001	747	337	81	56	152	10	36	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	a0002	747	2	0	2	0	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	a0003	747	1	1	0	0	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL1A_chr18_24157052_24402824	1/1	a0001	950	191	93	28	38	8	22	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	a0002	950	6	1	5	0	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	a0003	950	3	0	2	1	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	a0004	950	3	3	0	0	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	a0005	950	1	1	0	0	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	a0006	950	1	0	1	0	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	a0007	950	1	0	0	1	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL2_chr20_62233521_62301183	1/1	a0001	480	342	85	72	132	14	37	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	a0002	480	3	3	0	0	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	a0003	480	2	2	0	0	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	a0004	480	1	0	0	0	0	1	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL3_chr7_24791540_24985178	1/1	a0001	887	319	83	67	124	8	35	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	a0002	887	2	0	0	0	2	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	a0003	887	1	0	1	0	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	a0004	887	1	1	0	0	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	a0005	887	1	1	0	0	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	a0006	887	1	1	0	0	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	a0007	887	1	0	0	0	0	1	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL5_chr11_3082107_3170310	1/1	a0001	879	270	76	53	95	14	30	copy fasta	OSBPL5	chr11	3082107	3170310