JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OSBPL5_chr11_3082107_3170310	0/0	a0002	879	39	13	7	10	1	8	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	a0003	879	5	0	4	1	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	a0004	879	3	2	1	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	a0005	879	2	2	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	a0006	879	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	a0007	879	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	a0008	879	1	0	1	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	a0009	879	1	0	0	1	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	a0010	879	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	a0011	879	1	0	0	1	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	a0012	879	1	0	0	0	1	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL6_chr2_178189512_178407893	1/1	a0001	934	187	66	32	41	11	35	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	a0002	934	11	2	6	1	1	1	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	a0003	934	2	0	0	2	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL7_chr17_47802372_47826794	1/1	a0001	842	390	98	82	154	13	41	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	a0002	842	3	0	0	3	0	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	a0003	842	3	0	0	3	0	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	a0004	842	2	2	0	0	0	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	a0005	842	1	0	0	1	0	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	a0006	842	1	0	0	0	1	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	a0007	842	1	0	0	0	0	1	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	a0008	842	1	0	0	1	0	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL8_chr12_76346797_76564771	1/1	a0001	889	235	81	52	61	8	31	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	a0002	889	1	0	0	1	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	a0003	889	1	0	0	0	0	1	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	a0004	889	1	1	0	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL9_chr1_51612092_51794219	1/1	a0001	736	180	76	36	44	10	12	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	a0002	736	2	2	0	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	a0003	736	1	0	1	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	a0004	736	1	1	0	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	a0005	736	1	0	1	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	a0006	736	1	1	0	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBP_chr11_59569398_59620774	1/1	a0001	807	315	90	67	126	4	26	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	a0002	807	2	1	1	0	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	a0003	807	1	0	0	1	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	a0004	807	1	0	0	1	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	a0005	807	1	1	0	0	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSCAR_chr19_54089668_54105803	0/1	a0001	263	316	72	71	125	14	33	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	a0002	263	88	8	9	64	0	7	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	a0003	263	27	12	1	10	2	2	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	a0004	263	6	0	0	6	0	0	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	a0005	263	3	0	0	3	0	0	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	a0006	263	1	0	1	0	0	0	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	a0007	263	1	1	0	0	0	0	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	a0008	263	1	1	0	0	0	0	copy fasta	OSCAR	chr19	54089668	54105803
OSCP1_chr1_36412906_36455451	1/0	a0001	379	209	57	36	80	10	25	copy fasta	OSCP1	chr1	36412906	36455451
OSCP1_chr1_36412906_36455451	0/1	a0002	379	77	6	14	51	3	2	copy fasta	OSCP1	chr1	36412906	36455451
OSCP1_chr1_36412906_36455451	0/0	a0003	379	73	13	8	40	3	9	copy fasta	OSCP1	chr1	36412906	36455451
OSCP1_chr1_36412906_36455451	0/0	a0004	379	16	16	0	0	0	0	copy fasta	OSCP1	chr1	36412906	36455451
OSCP1_chr1_36412906_36455451	0/0	a0005	379	2	0	0	2	0	0	copy fasta	OSCP1	chr1	36412906	36455451