JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OSCP1_chr1_36412906_36455451	0/0	a0006	379	2	0	2	0	0	0	copy fasta	OSCP1	chr1	36412906	36455451
OSCP1_chr1_36412906_36455451	0/0	a0007	379	1	0	0	1	0	0	copy fasta	OSCP1	chr1	36412906	36455451
OSER1_chr20_44190939_44215771	1/0	a0001	292	279	50	65	115	14	34	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/1	a0002	292	164	46	11	90	2	14	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	a0003	292	1	0	0	1	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSGEPL1_chr2_189741660_189767792	1/1	a0001	414	342	93	73	138	10	26	copy fasta	OSGEPL1	chr2	189741660	189767792
OSGEPL1_chr2_189741660_189767792	0/0	a0002	414	10	0	0	6	0	4	copy fasta	OSGEPL1	chr2	189741660	189767792
OSGEPL1_chr2_189741660_189767792	0/0	a0003	414	6	5	1	0	0	0	copy fasta	OSGEPL1	chr2	189741660	189767792
OSGEP_chr14_20441401_20459812	1/1	a0001	335	459	91	82	224	18	42	copy fasta	OSGEP	chr14	20441401	20459812
OSGEP_chr14_20441401_20459812	0/0	a0002	335	1	1	0	0	0	0	copy fasta	OSGEP	chr14	20441401	20459812
OSGIN1_chr16_83948240_83971332	1/1	a0001	477	332	92	60	117	15	46	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	a0002	477	6	0	3	3	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	a0003	477	5	5	0	0	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	a0004	477	3	0	3	0	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	a0005	477	1	0	1	0	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	a0006	477	1	0	0	0	1	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	a0007	477	1	0	1	0	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	a0008	477	1	1	0	0	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN2_chr8_89897570_89932888	1/1	a0001	549	405	83	66	196	16	42	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	a0002	549	8	8	0	0	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	a0003	549	4	4	0	0	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	a0004	549	1	0	0	1	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	a0005	549	1	1	0	0	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	a0006	549	1	0	0	1	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSMR_chr5_38841012_38940641	1/1	a0001	979	232	43	53	99	8	27	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	a0002	979	50	3	1	46	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	a0003	979	32	12	6	5	2	7	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	a0004	979	27	16	4	0	2	5	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	a0005	979	18	3	1	13	0	1	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	a0006	979	7	7	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	a0007	979	3	3	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	a0008	979	2	0	0	2	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	a0009	979	2	2	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	a0010	979	1	0	1	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	a0011	979	1	0	0	0	0	1	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	a0012	979	1	0	0	1	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	a0013	979	1	0	0	0	0	1	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	a0014	979	1	1	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	a0015	979	1	0	0	0	0	1	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	a0016	979	1	1	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	a0017	979	1	1	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	a0018	979	1	0	0	0	0	1	copy fasta	OSMR	chr5	38841012	38940641
OSM_chr22_30257829_30271851	1/1	a0001	252	413	92	77	181	18	43	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	a0002	252	11	0	0	11	0	0	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	a0003	252	3	0	0	2	0	1	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	a0004	252	3	0	0	3	0	0	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	a0005	252	1	0	0	1	0	0	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	a0006	252	1	1	0	0	0	0	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	a0007	252	1	0	1	0	0	0	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	a0008	252	1	1	0	0	0	0	copy fasta	OSM	chr22	30257829	30271851