JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OTOF_chr2_26452203_26483124	0/0	a0020	1230	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	a0021	1230	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26563756	1/0	a0001	1997	119	33	25	36	6	18	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0002	1997	43	1	15	9	4	14	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0003	1997	34	29	5	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0004	1997	24	0	0	22	0	2	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0005	1997	10	10	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0006	1997	9	0	9	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0007	1997	5	4	1	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0008	1997	4	4	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0009	1997	3	1	2	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0010	1997	3	0	0	3	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0011	1997	2	2	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0012	1997	2	0	2	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/1	a0013	1997	2	0	1	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0014	1997	2	2	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0015	1997	2	0	0	2	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0016	2001	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0017	1997	1	0	1	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0018	1997	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0019	1997	1	0	0	0	0	1	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0020	1997	1	0	1	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0021	1997	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0022	1997	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0023	1997	1	0	0	0	1	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0024	1997	1	0	0	0	1	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0025	1997	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0026	1997	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0027	1997	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0028	1997	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0029	1997	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0030	1997	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0031	1997	1	0	0	0	0	1	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0032	1997	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0033	1997	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0034	1997	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	a0035	1997	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOGL_chr12_80094537_80385880	0/1	a0001	2353	47	10	13	15	0	8	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0002	2353	25	15	4	4	0	2	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0003	2353	20	10	4	5	0	1	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0004	2353	11	5	3	1	0	2	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0005	2353	11	6	2	0	0	3	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0006	2353	8	8	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0007	2353	6	4	0	2	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0008	2353	4	4	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0009	2353	4	4	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	1/0	a0010	2353	4	0	3	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0011	2353	4	0	4	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0012	2353	3	2	1	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0013	2353	2	1	1	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880