JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OTOGL_chr12_80094537_80385880	0/0	a0014	2353	2	1	1	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0015	2353	2	2	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0016	2353	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0017	2353	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0018	2353	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0019	2353	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0020	2353	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0021	2353	1	0	1	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0022	2353	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0023	2353	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0024	2353	1	0	0	1	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0025	2353	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0026	2353	1	0	0	1	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0027	2353	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0028	2353	1	0	0	1	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0029	2353	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	a0030	2353	1	0	1	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOG_chr11_17542259_17651044	0/0	a0001	2913	46	4	6	28	2	6	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/1	a0002	2913	16	0	1	13	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	1/0	a0003	2913	12	0	7	3	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0004	2913	7	2	1	4	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0005	2913	7	0	4	2	1	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0006	2913	5	3	1	0	1	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0007	2913	5	0	0	5	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0008	2913	5	4	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0009	2913	5	4	0	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0010	2913	5	2	1	0	1	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0011	2913	4	1	0	1	0	2	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0012	2913	4	2	1	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0013	2913	4	2	2	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0014	2913	4	0	1	1	1	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0015	2913	3	0	0	0	0	3	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0016	2913	3	2	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0017	2913	2	2	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0018	2913	2	1	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0019	2913	2	2	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0020	2913	2	0	0	2	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0021	2913	2	0	1	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0022	2913	2	0	0	2	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0023	2913	2	0	0	2	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0024	2913	2	0	0	0	0	2	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0025	2913	2	1	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0026	2913	2	1	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0027	2913	2	0	0	0	2	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0028	2913	2	0	2	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0029	2913	2	0	0	2	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0030	2913	2	0	0	2	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0031	2913	2	0	2	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0032	2913	2	0	0	0	0	2	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0033	2913	2	0	2	0	0	0	copy fasta	OTOG	chr11	17542259	17651044