JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OTOG_chr11_17542259_17651044	0/0	a0084	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0085	2913	1	0	0	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0086	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0087	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0088	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0089	2913	1	0	0	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0090	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0091	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0092	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0093	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0094	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0095	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0096	2913	1	0	0	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0097	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0098	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0099	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0100	2913	1	0	0	0	1	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0101	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0102	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0103	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0104	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0105	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0106	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0107	2913	1	0	0	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0108	2913	1	0	0	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0109	2913	1	0	0	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0110	2913	1	0	0	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0111	2913	1	0	0	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0112	2913	1	0	0	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0113	2913	1	0	0	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0114	2913	1	0	0	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0115	2913	1	0	0	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0116	2913	1	0	0	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0117	2913	1	0	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0118	2913	1	0	0	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0119	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0120	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0121	2913	1	0	0	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0122	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0123	2913	1	0	0	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0124	2913	1	0	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0125	2913	1	0	0	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0126	2913	1	0	0	0	1	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0127	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0128	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0129	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0130	2913	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	a0131	2913	1	0	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOL1_chr3_161491808_161508942	1/0	a0001	477	244	33	46	144	7	13	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/1	a0002	477	195	61	37	59	9	28	copy fasta	OTOL1	chr3	161491808	161508942