JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OTOL1_chr3_161491808_161508942	0/0	a0003	477	2	0	0	0	0	2	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/0	a0004	477	2	2	0	0	0	0	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/0	a0005	477	1	0	0	1	0	0	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/0	a0006	477	1	0	0	0	0	1	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/0	a0007	333	1	0	1	0	0	0	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/0	a0008	477	1	1	0	0	0	0	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/0	a0009	477	1	1	0	0	0	0	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/0	a0010	477	1	1	0	0	0	0	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/0	a0011	477	1	1	0	0	0	0	copy fasta	OTOL1	chr3	161491808	161508942
OTOP1_chr4_4183726_4231929	0/0	a0001	612	226	36	38	118	8	26	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	1/0	a0002	612	119	21	25	63	2	7	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/1	a0003	612	17	0	7	6	1	2	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	a0004	610	12	4	4	0	2	2	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	a0005	610	10	0	10	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	a0006	612	8	8	0	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	a0007	612	8	7	1	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	a0008	612	8	8	0	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	a0009	610	5	3	0	0	0	2	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	a0010	612	4	0	1	0	1	2	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	a0011	610	2	2	0	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	a0012	612	2	2	0	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	a0013	612	1	1	0	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	a0014	610	1	1	0	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	a0015	612	1	0	0	1	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	a0016	612	1	0	0	0	0	1	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	a0017	612	1	1	0	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	a0018	610	1	0	0	0	0	1	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	a0019	612	1	0	0	0	0	1	copy fasta	OTOP1	chr4	4183726	4231929
OTOP2_chr17_74919273_74938912	0/1	a0001	562	228	26	53	106	13	29	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	1/0	a0002	562	176	56	19	79	5	16	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	a0003	562	6	5	1	0	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	a0004	562	6	4	2	0	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	a0005	562	3	0	0	3	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	a0006	562	3	0	0	0	0	3	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	a0007	562	3	3	0	0	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	a0008	562	2	1	1	0	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	a0009	562	1	0	0	1	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	a0010	562	1	1	0	0	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	a0011	562	1	0	1	0	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	a0012	562	1	0	0	1	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	a0013	562	1	0	1	0	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP3_chr17_74930898_74954992	0/1	a0001	578	174	16	56	72	4	25	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	a0002	578	104	17	13	66	3	5	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	a0003	578	88	11	6	56	4	11	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	a0004	578	40	32	4	0	0	4	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	1/0	a0005	578	27	6	6	5	6	3	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	a0006	578	6	5	1	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	a0007	578	6	6	0	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	a0008	578	3	0	0	3	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	a0009	578	3	3	0	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992