JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OTUD5_chrX_48917024_48962607	0/0	a0005	476	1	0	0	1	0	0	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	a0006	52	1	0	0	1	0	0	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	a0007	169	1	0	0	1	0	0	copy fasta	OTUD5	chrX	48917024	48962607
OTUD6A_chrX_70057457_70069179	0/0	a0000	0	3	0	0	3	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	1/1	a0001	288	314	64	59	147	11	31	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	a0002	288	8	7	1	0	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	a0003	288	5	5	0	0	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	a0004	28	1	0	0	1	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	a0005	288	1	0	1	0	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	a0006	288	1	0	0	0	0	1	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	a0007	288	1	0	0	1	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	a0008	81	1	0	0	1	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	a0009	84	1	0	0	1	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6B_chr8_91065344_91092093	1/1	a0001	293	344	83	60	157	12	30	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	a0002	293	25	6	2	17	0	0	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	a0003	293	1	1	0	0	0	0	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	a0004	293	1	1	0	0	0	0	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	a0005	293	1	1	0	0	0	0	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD7A_chr15_31470398_31875673	0/0	a0001	932	197	76	40	69	2	10	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	a0002	933	39	7	10	13	2	7	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	a0003	932	4	3	1	0	0	0	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	a0004	932	2	0	0	2	0	0	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	a0005	937	1	0	1	0	0	0	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	a0006	933	1	0	0	0	0	1	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7B_chr1_149932812_150015726	1/1	a0001	843	277	80	47	118	6	24	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	a0002	843	1	0	1	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTULINL_chr5_14576792_14621180	1/1	a0001	356	358	83	62	156	13	42	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	a0002	356	9	7	2	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	a0003	356	5	0	0	4	0	1	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	a0004	356	3	0	1	0	1	1	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	a0005	356	1	1	0	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	a0006	356	1	0	0	1	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	a0007	356	1	0	1	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	a0008	356	1	0	0	1	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	a0009	356	1	1	0	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULIN_chr5_14659718_14704850	1/1	a0001	352	319	61	55	158	8	35	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	a0002	345	15	15	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	a0003	352	11	9	2	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	a0004	352	5	4	1	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	a0005	352	2	0	0	0	0	2	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	a0006	352	1	0	0	0	0	1	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	a0007	352	1	1	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTX1_chr2_63045830_63062831	1/1	a0001	354	364	80	66	154	14	48	copy fasta	OTX1	chr2	63045830	63062831
OTX1_chr2_63045830_63062831	0/0	a0002	354	2	2	0	0	0	0	copy fasta	OTX1	chr2	63045830	63062831
OTX2_chr14_56794905_56815479	1/1	a0001	297	403	94	75	170	14	48	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	a0002	297	1	0	1	0	0	0	copy fasta	OTX2	chr14	56794905	56815479
OVCA2_chr17_2037022_2048425	1/1	a0001	227	382	88	70	164	14	44	copy fasta	OVCA2	chr17	2037022	2048425
OVCA2_chr17_2037022_2048425	0/0	a0002	227	1	1	0	0	0	0	copy fasta	OVCA2	chr17	2037022	2048425
OVCA2_chr17_2037022_2048425	0/0	a0003	227	1	1	0	0	0	0	copy fasta	OVCA2	chr17	2037022	2048425
OVCH1_chr12_29434853_29502686	0/0	a0001	1090	79	13	21	28	5	12	copy fasta	OVCH1	chr12	29434853	29502686