JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OVCH1_chr12_29434853_29502686	0/0	a0002	1090	74	6	8	49	4	7	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0003	1090	48	6	6	25	4	7	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0004	1090	25	2	3	14	1	5	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0005	1090	16	0	0	15	0	1	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0006	1090	14	0	1	12	0	1	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0007	1090	10	1	0	9	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0008	1090	10	2	8	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0009	1090	10	6	2	1	0	1	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0010	1090	9	0	1	7	0	1	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0011	1090	9	8	1	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0012	1090	7	7	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0013	1090	6	0	0	6	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0014	1090	6	2	1	2	0	1	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0015	1090	6	5	1	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0016	1090	5	0	4	0	1	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0017	1090	4	3	0	1	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0018	1090	4	0	0	2	0	2	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0019	1090	4	0	3	0	1	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0020	1090	4	4	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0021	1090	4	4	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0022	1090	3	3	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0023	1090	3	0	1	0	2	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/1	a0024	1090	3	1	0	0	0	1	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0025	1090	2	1	0	1	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0026	1090	2	0	2	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0027	1090	2	2	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	1/0	a0028	1090	2	1	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0029	1090	1	0	0	1	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0030	1090	1	0	0	1	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0031	1090	1	0	0	1	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0032	1090	1	1	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0033	1090	1	0	0	1	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0034	1090	1	0	0	0	0	1	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0035	1090	1	1	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0036	1090	1	0	0	0	0	1	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0037	1090	1	1	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0038	1090	1	0	0	0	0	1	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0039	1090	1	1	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0040	1090	1	0	0	0	0	1	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0041	1090	1	1	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0042	1090	1	1	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0043	1090	1	1	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0044	1090	1	1	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0045	1090	1	0	0	0	0	1	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0046	1090	1	1	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0047	1090	1	1	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0048	1090	1	1	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0049	1090	1	1	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0050	1090	1	0	0	0	0	1	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0051	876	1	0	1	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686