JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OVCH1_chr12_29434853_29502686	0/0	a0052	1090	1	0	0	1	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0053	1090	1	0	0	0	0	1	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0054	1090	1	1	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0055	1090	1	1	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0056	1090	1	1	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	a0057	1090	1	0	0	1	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH2_chr11_7684437_7711477	0/1	a0001	565	161	13	23	101	6	17	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0002	565	152	20	36	68	3	25	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0003	565	32	3	4	21	3	1	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0004	565	19	18	1	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0005	565	16	3	1	12	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0006	565	14	1	1	11	0	1	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0007	565	11	1	4	0	4	2	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0008	463	8	7	1	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0009	565	6	1	3	0	0	2	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0010	463	6	6	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0011	565	6	0	4	2	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0012	565	6	4	0	2	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0013	565	5	1	1	3	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0014	565	5	4	0	0	0	1	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0015	565	4	0	0	4	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0016	455	3	3	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0017	565	3	2	1	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0018	565	3	3	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0019	565	2	0	2	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0020	565	2	2	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0021	401	1	1	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0022	565	1	1	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0023	565	1	0	0	1	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0024	565	1	0	1	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0025	565	1	0	0	0	0	1	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0026	565	1	0	1	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0027	400	1	1	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0028	565	1	1	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	1/0	a0029	565	1	0	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0030	565	1	1	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0031	565	1	1	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	a0032	565	1	0	0	1	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVGP1_chr1_111409319_111432735	1/1	a0001	678	118	14	41	40	10	11	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0002	678	98	14	9	55	0	20	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0003	655	62	6	12	32	3	9	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0004	678	47	0	2	38	0	7	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0005	670	16	1	3	11	1	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0006	678	9	9	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0007	655	7	4	1	2	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0008	678	7	0	0	7	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0009	670	6	6	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0010	663	6	6	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0011	678	5	4	0	1	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0012	685	4	4	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735