JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OVGP1_chr1_111409319_111432735	0/0	a0013	685	4	4	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0014	678	3	3	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0015	678	3	3	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0016	670	3	3	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0017	693	3	0	0	2	0	1	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0018	670	3	3	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0019	670	2	1	1	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0020	678	2	2	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0021	670	2	2	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0022	678	2	0	0	2	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0023	678	1	0	0	1	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0024	640	1	1	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0025	663	1	1	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0026	678	1	0	0	1	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0027	655	1	0	0	1	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0028	670	1	1	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0029	670	1	1	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0030	678	1	1	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0031	685	1	1	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0032	685	1	1	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0033	678	1	0	0	1	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	a0034	655	1	0	1	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVOL1_chr11_65782063_65802214	1/1	a0001	267	442	96	74	220	16	34	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	a0002	267	1	0	0	1	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	a0003	267	1	0	0	1	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL2_chr20_18019163_18062916	1/1	a0001	275	384	92	76	152	16	46	copy fasta	OVOL2	chr20	18019163	18062916
OVOL2_chr20_18019163_18062916	0/0	a0002	275	2	2	0	0	0	0	copy fasta	OVOL2	chr20	18019163	18062916
OVOL3_chr19_36106143_36118711	1/1	a0001	190	433	94	78	197	18	44	copy fasta	OVOL3	chr19	36106143	36118711
OVOL3_chr19_36106143_36118711	0/0	a0002	190	8	0	0	7	0	1	copy fasta	OVOL3	chr19	36106143	36118711
OVOL3_chr19_36106143_36118711	0/0	a0003	190	5	0	0	4	0	1	copy fasta	OVOL3	chr19	36106143	36118711
OVOL3_chr19_36106143_36118711	0/0	a0004	190	2	0	2	0	0	0	copy fasta	OVOL3	chr19	36106143	36118711
OVOL3_chr19_36106143_36118711	0/0	a0005	190	1	1	0	0	0	0	copy fasta	OVOL3	chr19	36106143	36118711
OVOL3_chr19_36106143_36118711	0/0	a0006	190	1	1	0	0	0	0	copy fasta	OVOL3	chr19	36106143	36118711
OXA1L_chr14_22761688_22778042	0/1	a0001	435	234	20	53	127	11	22	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	1/0	a0002	435	90	41	7	32	1	8	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	a0003	436	87	3	17	48	5	14	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	a0004	435	38	20	5	11	0	2	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	a0005	436	12	10	1	0	1	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	a0006	435	3	3	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	a0007	435	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	a0008	436	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	a0009	345	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	a0010	435	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	a0011	435	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	a0012	436	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXCT1_chr5_41725065_41875425	1/1	a0001	520	199	81	50	28	8	30	copy fasta	OXCT1	chr5	41725065	41875425
OXCT1_chr5_41725065_41875425	0/0	a0002	520	1	1	0	0	0	0	copy fasta	OXCT1	chr5	41725065	41875425
OXCT2_chr1_39764523_39776348	1/1	a0001	517	262	31	39	153	7	30	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	a0002	517	106	50	17	29	5	5	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	a0003	259	31	0	1	26	1	3	copy fasta	OXCT2	chr1	39764523	39776348