JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OXCT2_chr1_39764523_39776348	0/0	a0004	517	26	2	11	6	1	6	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	a0005	517	5	0	0	5	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	a0006	259	5	5	0	0	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	a0007	259	2	2	0	0	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	a0008	517	2	2	0	0	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	a0009	517	2	2	0	0	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	a0010	517	2	2	0	0	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	a0011	517	1	0	0	1	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	a0012	517	1	0	1	0	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	a0013	517	1	0	0	1	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	a0014	517	1	0	0	1	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	a0015	517	1	1	0	0	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	a0016	517	1	1	0	0	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	a0017	517	1	0	0	1	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	a0018	259	1	0	0	1	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	a0019	517	1	0	1	0	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	a0020	517	1	0	0	1	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	a0021	259	1	0	0	1	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXER1_chr2_42757499_42769135	1/1	a0001	384	224	59	51	66	14	32	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	a0002	384	178	23	24	115	3	13	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	a0003	384	6	5	1	0	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	a0004	384	5	0	0	5	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	a0005	384	4	4	0	0	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	a0006	384	3	3	0	0	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	a0007	37	2	0	1	0	0	1	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	a0008	384	1	1	0	0	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	a0009	384	1	1	0	0	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	a0010	384	1	0	1	0	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	a0011	384	1	0	0	0	1	0	copy fasta	OXER1	chr2	42757499	42769135
OXGR1_chr13_96980713_96999476	1/1	a0001	337	447	94	78	208	18	47	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	a0002	52	12	0	0	12	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	a0003	337	1	1	0	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	a0004	239	1	0	0	0	0	1	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	a0005	337	1	1	0	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXLD1_chr17_81660036_81671605	1/1	a0001	147	397	89	67	176	18	45	copy fasta	OXLD1	chr17	81660036	81671605
OXLD1_chr17_81660036_81671605	0/0	a0002	147	3	2	1	0	0	0	copy fasta	OXLD1	chr17	81660036	81671605
OXLD1_chr17_81660036_81671605	0/0	a0003	147	1	0	0	0	0	1	copy fasta	OXLD1	chr17	81660036	81671605
OXLD1_chr17_81660036_81671605	0/0	a0004	147	1	1	0	0	0	0	copy fasta	OXLD1	chr17	81660036	81671605
OXNAD1_chr3_16260212_16311087	1/1	a0001	312	159	36	30	75	4	12	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	a0002	312	149	28	35	69	2	15	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	a0003	312	72	27	9	28	3	5	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	a0004	312	1	1	0	0	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	a0005	73	1	0	0	0	1	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	a0006	312	1	0	1	0	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	a0007	312	1	0	1	0	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXR1_chr8_106265190_106757694	1/1	a0001	873	165	64	35	50	2	12	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	a0002	873	3	3	0	0	0	0	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	a0003	873	2	2	0	0	0	0	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	a0004	873	1	0	1	0	0	0	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	a0005	873	1	1	0	0	0	0	copy fasta	OXR1	chr8	106265190	106757694