JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OXSM_chr3_25785090_25799531	0/0	a0000	0	14	14	0	0	0	0	copy fasta	OXSM	chr3	25785090	25799531
OXSM_chr3_25785090_25799531	1/1	a0001	459	362	82	70	153	12	43	copy fasta	OXSM	chr3	25785090	25799531
OXSM_chr3_25785090_25799531	0/0	a0002	459	2	0	0	1	0	1	copy fasta	OXSM	chr3	25785090	25799531
OXSM_chr3_25785090_25799531	0/0	a0003	459	1	0	0	1	0	0	copy fasta	OXSM	chr3	25785090	25799531
OXSM_chr3_25785090_25799531	0/0	a0004	463	1	0	0	1	0	0	copy fasta	OXSM	chr3	25785090	25799531
OXSM_chr3_25785090_25799531	0/0	a0005	459	1	0	1	0	0	0	copy fasta	OXSM	chr3	25785090	25799531
OXSM_chr3_25785090_25799531	0/0	a0006	459	1	0	1	0	0	0	copy fasta	OXSM	chr3	25785090	25799531
OXSR1_chr3_38160537_38260484	1/1	a0001	527	168	34	38	69	9	16	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	a0002	527	80	40	16	19	1	4	copy fasta	OXSR1	chr3	38160537	38260484
OXTR_chr3_8745381_8774613	1/1	a0001	389	377	86	53	177	18	41	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	a0002	389	87	7	26	49	0	5	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	a0003	389	3	3	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	a0004	389	3	2	1	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	a0005	389	1	0	0	1	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	a0006	389	1	0	1	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	a0007	389	1	0	1	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	a0008	389	1	0	0	1	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXT_chr20_3066620_3077517	1/1	a0001	125	462	96	82	218	18	46	copy fasta	OXT	chr20	3066620	3077517
P2RX1_chr17_3891592_3921465	1/1	a0001	399	370	87	78	144	14	45	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	a0002	399	3	3	0	0	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	a0003	399	2	2	0	0	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	a0004	399	1	0	0	0	0	1	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	a0005	399	1	0	0	1	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	a0006	399	1	0	0	1	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX2_chr12_132613776_132627388	1/1	a0001	471	381	99	74	142	16	48	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	a0002	471	1	0	0	1	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	a0003	441	1	1	0	0	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	a0004	471	1	0	0	1	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	a0005	471	1	0	0	1	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	a0006	471	1	0	0	1	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX3_chr11_57333352_57377396	1/0	a0001	397	209	86	34	60	13	15	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	a0002	397	131	6	21	79	4	21	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/1	a0003	397	10	0	7	0	1	1	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	a0004	397	2	2	0	0	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	a0005	397	1	0	0	1	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	a0006	397	1	0	0	0	0	1	copy fasta	P2RX3	chr11	57333352	57377396
P2RX4_chr12_121205129_121239106	1/1	a0001	388	311	80	49	131	12	37	copy fasta	P2RX4	chr12	121205129	121239106
P2RX4_chr12_121205129_121239106	0/0	a0002	388	71	10	19	31	2	9	copy fasta	P2RX4	chr12	121205129	121239106
P2RX4_chr12_121205129_121239106	0/0	a0003	388	3	0	1	0	2	0	copy fasta	P2RX4	chr12	121205129	121239106
P2RX4_chr12_121205129_121239106	0/0	a0004	388	2	2	0	0	0	0	copy fasta	P2RX4	chr12	121205129	121239106
P2RX4_chr12_121205129_121239106	0/0	a0005	388	1	0	1	0	0	0	copy fasta	P2RX4	chr12	121205129	121239106
P2RX5_chr17_3668227_3701155	0/1	a0001	146	219	14	56	110	13	25	copy fasta	P2RX5	chr17	3668227	3701155
P2RX5_chr17_3668227_3701155	1/0	a0002	422	139	68	16	32	3	19	copy fasta	P2RX5	chr17	3668227	3701155
P2RX5_chr17_3668227_3701155	0/0	a0003	422	2	0	2	0	0	0	copy fasta	P2RX5	chr17	3668227	3701155
P2RX5_chr17_3668227_3701155	0/0	a0004	361	1	1	0	0	0	0	copy fasta	P2RX5	chr17	3668227	3701155
P2RX5_chr17_3668227_3701155	0/0	a0005	422	1	1	0	0	0	0	copy fasta	P2RX5	chr17	3668227	3701155
P2RX6_chr22_21010165_21033008	1/0	a0001	441	424	96	68	204	15	40	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/1	a0002	441	32	1	15	7	3	5	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	a0003	28	1	0	1	0	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	a0004	441	1	0	0	1	0	0	copy fasta	P2RX6	chr22	21010165	21033008