JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
P2RY11_chr19_10106693_10120372	0/0	a0008	374	1	0	1	0	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	a0009	374	1	0	0	0	0	1	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	a0010	374	1	1	0	0	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	a0011	374	1	1	0	0	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	a0012	374	1	0	0	1	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY12_chr3_151331843_151389753	1/1	a0001	342	382	76	63	179	18	44	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	a0002	342	11	10	1	0	0	0	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	a0003	342	1	1	0	0	0	0	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	a0004	342	1	0	0	1	0	0	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	a0005	342	1	1	0	0	0	0	copy fasta	P2RY12	chr3	151331843	151389753
P2RY13_chr3_151321312_151334549	0/1	a0001	354	379	86	63	179	11	39	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	1/0	a0002	354	62	6	9	37	7	2	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	a0003	354	1	0	0	0	0	1	copy fasta	P2RY13	chr3	151321312	151334549
P2RY14_chr3_151207117_151283542	1/1	a0001	338	396	91	68	176	15	44	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	a0002	338	3	0	0	3	0	0	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	a0003	338	2	2	0	0	0	0	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	a0004	338	1	0	0	0	1	0	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	a0005	338	1	0	0	1	0	0	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	a0006	338	1	1	0	0	0	0	copy fasta	P2RY14	chr3	151207117	151283542
P2RY1_chr3_152830131_152846439	1/1	a0001	373	363	98	70	143	10	40	copy fasta	P2RY1	chr3	152830131	152846439
P2RY1_chr3_152830131_152846439	0/0	a0002	373	4	0	0	4	0	0	copy fasta	P2RY1	chr3	152830131	152846439
P2RY1_chr3_152830131_152846439	0/0	a0003	373	1	0	0	1	0	0	copy fasta	P2RY1	chr3	152830131	152846439
P2RY2_chr11_73213281_73247427	0/0	a0001	377	201	82	35	52	8	24	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	a0002	377	120	2	26	77	2	13	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/1	a0003	377	45	1	19	13	6	5	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	1/0	a0004	377	40	9	4	22	2	2	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	a0005	377	4	0	2	0	0	2	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	a0006	377	2	0	0	2	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	a0007	32	1	1	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	a0008	377	1	0	0	1	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	a0009	377	1	1	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	a0010	377	1	0	0	1	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY4_chrX_70253166_70265204	1/1	a0001	365	178	14	50	82	11	19	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	a0002	365	69	17	2	43	0	7	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	a0003	365	48	17	5	20	1	5	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	a0004	365	12	6	0	5	1	0	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	a0005	365	11	11	0	0	0	0	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	a0006	365	3	3	0	0	0	0	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	a0007	365	3	3	0	0	0	0	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	a0008	365	2	0	0	0	0	2	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	a0009	8	1	0	0	1	0	0	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	a0010	365	1	1	0	0	0	0	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	a0011	347	1	0	0	0	0	1	copy fasta	P2RY4	chrX	70253166	70265204
P2RY6_chr11_73267338_73303625	1/1	a0001	328	323	92	57	114	18	40	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	a0002	328	1	0	1	0	0	0	copy fasta	P2RY6	chr11	73267338	73303625
P2RY8_chrX_1457581_1542185	1/0	a0001	359	95	22	27	38	3	4	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	a0002	359	11	6	4	0	0	1	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	a0003	62	1	0	1	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	a0004	361	1	0	0	1	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	a0005	361	1	0	0	0	0	1	copy fasta	P2RY8	chrX	1457581	1542185