JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
P2RY8_chrX_1457581_1542185	0/0	a0006	341	1	1	0	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	a0007	341	1	0	1	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	a0008	359	1	0	0	0	0	1	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	a0009	358	1	0	0	1	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	a0010	62	1	0	0	0	0	1	copy fasta	P2RY8	chrX	1457581	1542185
P3H1_chr1_42741374_42772028	1/1	a0001	736	354	87	52	163	12	38	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	a0002	736	17	1	4	8	1	3	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	a0003	736	8	4	2	0	0	2	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	a0004	736	6	0	0	5	1	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	a0005	736	5	0	0	5	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	a0006	736	5	2	3	0	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	a0007	736	2	1	1	0	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	a0008	736	1	0	0	1	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	a0009	736	1	0	0	0	0	1	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	a0010	736	1	1	0	0	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	a0011	736	1	0	1	0	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	a0012	736	1	1	0	0	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	a0013	736	1	0	0	1	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	a0014	736	1	1	0	0	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	a0015	736	1	0	1	0	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	a0016	736	1	0	0	1	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H2_chr3_189951728_190125897	1/1	a0001	708	293	76	56	119	10	30	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	a0002	708	4	4	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	a0003	708	1	0	0	0	0	1	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	a0004	708	1	0	0	1	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	a0005	708	1	0	0	1	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	a0006	708	1	0	0	0	0	1	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	a0007	708	1	1	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	a0008	708	1	1	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	a0009	708	1	0	0	1	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H3_chr12_6823407_6844847	0/0	a0001	736	140	31	25	72	3	9	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/1	a0002	736	126	29	21	65	3	7	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	1/0	a0003	736	106	16	19	39	8	23	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	a0004	736	23	3	6	8	1	5	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	a0005	736	20	0	0	20	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	a0006	736	17	10	4	0	0	3	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	a0007	736	5	0	0	5	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	a0008	736	2	0	1	0	1	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	a0009	736	2	0	0	2	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	a0010	736	1	1	0	0	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	a0011	736	1	1	0	0	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	a0012	736	1	1	0	0	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	a0013	736	1	0	0	0	0	1	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	a0014	736	1	0	0	1	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	a0015	736	1	0	0	1	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	a0016	736	1	0	0	1	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	a0017	740	1	0	0	1	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	a0018	736	1	0	0	0	0	1	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	a0019	736	1	0	0	0	0	1	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	a0020	736	1	0	0	1	0	0	copy fasta	P3H3	chr12	6823407	6844847