JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
P3H4_chr17_41796953_41816949	1/0	a0001	437	232	69	38	92	9	23	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/1	a0002	437	163	21	38	81	7	15	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	a0003	437	3	3	0	0	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	a0004	437	1	1	0	0	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	a0005	437	1	0	0	1	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	a0006	437	1	1	0	0	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	a0007	437	1	0	0	1	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	a0008	437	1	0	0	1	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	a0009	437	1	1	0	0	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3R3URF_chr1_46170486_46181488	1/1	a0001	95	419	97	82	176	18	44	copy fasta	P3R3URF	chr1	46170486	46181488
P3R3URF_chr1_46170486_46181488	0/0	a0002	95	1	0	1	0	0	0	copy fasta	P3R3URF	chr1	46170486	46181488
P3R3URF_chr1_46170486_46181488	0/0	a0003	95	1	1	0	0	0	0	copy fasta	P3R3URF	chr1	46170486	46181488
P3R3URF_chr1_46170486_46181488	0/0	a0004	95	1	0	1	0	0	0	copy fasta	P3R3URF	chr1	46170486	46181488
P4HA1_chr10_73002217_73101866	1/1	a0001	534	233	82	24	105	2	18	copy fasta	P4HA1	chr10	73002217	73101866
P4HA1_chr10_73002217_73101866	0/0	a0002	534	1	0	0	1	0	0	copy fasta	P4HA1	chr10	73002217	73101866
P4HA2_chr5_132185147_132232853	1/1	a0001	533	422	96	73	199	14	38	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	a0002	533	2	2	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	a0003	533	1	0	1	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	a0004	533	1	0	0	1	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA3_chr11_74261657_74316640	1/1	a0001	544	297	79	51	119	11	35	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	a0002	544	87	7	8	59	3	10	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	a0003	544	7	7	0	0	0	0	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	a0004	544	2	2	0	0	0	0	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	a0005	544	2	0	0	2	0	0	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	a0006	544	1	1	0	0	0	0	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	a0007	544	1	0	1	0	0	0	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	a0008	544	1	0	0	0	0	1	copy fasta	P4HA3	chr11	74261657	74316640
P4HB_chr17_81838166_81865535	1/1	a0001	508	373	91	82	150	12	36	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	a0002	508	1	1	0	0	0	0	copy fasta	P4HB	chr17	81838166	81865535
P4HTM_chr3_48985241_49012153	1/1	a0001	502	222	84	42	62	16	16	copy fasta	P4HTM	chr3	48985241	49012153
PA2G4_chr12_56099559_56118910	1/1	a0001	394	350	86	76	130	18	38	copy fasta	PA2G4	chr12	56099559	56118910
PA2G4_chr12_56099559_56118910	0/0	a0002	394	1	1	0	0	0	0	copy fasta	PA2G4	chr12	56099559	56118910
PA2G4_chr12_56099559_56118910	0/0	a0003	394	1	1	0	0	0	0	copy fasta	PA2G4	chr12	56099559	56118910
PAAF1_chr11_73871999_73936114	1/1	a0001	392	262	78	46	99	7	30	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	a0002	392	55	13	6	31	0	5	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	a0003	392	50	3	5	28	3	11	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	a0004	392	2	1	1	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	a0005	392	1	1	0	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PABIR1_chr9_68775065_68790566	1/1	a0001	287	435	97	76	208	16	36	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	a0002	287	1	1	0	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR2_chrX_134764566_134802205	1/1	a0001	267	217	60	33	93	7	22	copy fasta	PABIR2	chrX	134764566	134802205
PABIR3_chrX_134802237_134859832	0/0	a0000	0	1	0	0	0	0	1	copy fasta	PABIR3	chrX	134802237	134859832
PABIR3_chrX_134802237_134859832	1/1	a0001	270	198	60	29	79	5	23	copy fasta	PABIR3	chrX	134802237	134859832
PABPC1L2A_chrX_73072276_73084512	1/1	a0001	200	274	66	57	110	11	28	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2B_chrX_72997939_73011106	1/1	a0001	200	293	74	52	128	11	26	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	a0002	62	1	1	0	0	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L_chr20_44905060_44944316	1/1	a0001	619	281	60	52	117	15	35	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	a0002	619	104	26	22	45	3	8	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	a0003	619	7	7	0	0	0	0	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	a0004	619	2	0	2	0	0	0	copy fasta	PABPC1L	chr20	44905060	44944316