JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PABPC1L_chr20_44905060_44944316	0/0	a0005	619	1	1	0	0	0	0	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	a0006	619	1	0	0	0	0	1	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1_chr8_100697916_100727088	1/1	a0001	636	416	96	66	200	16	36	copy fasta	PABPC1	chr8	100697916	100727088
PABPC3_chr13_25091136_25104254	1/1	a0001	631	433	91	77	208	17	38	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	a0002	631	4	4	0	0	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	a0003	631	4	0	3	0	1	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	a0004	631	2	2	0	0	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	a0005	631	2	0	0	2	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	a0006	631	2	0	0	2	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	a0007	631	2	0	0	0	0	2	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	a0008	631	1	0	0	0	0	1	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	a0009	631	1	0	0	1	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	a0010	631	1	0	0	0	0	1	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	a0011	631	1	0	0	1	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	a0012	631	1	0	0	1	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	a0013	631	1	0	0	0	0	1	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	a0014	631	1	0	0	0	0	1	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	a0015	631	1	1	0	0	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	a0016	631	1	0	0	1	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC4L_chr4_134191333_134206789	0/0	a0001	370	258	62	39	132	4	21	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	1/1	a0002	370	99	22	39	2	9	25	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	a0003	370	3	3	0	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	a0004	370	2	2	0	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	a0005	370	1	1	0	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	a0006	370	1	0	0	0	1	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4_chr1_39555816_39581790	1/1	a0001	660	372	86	58	169	17	40	copy fasta	PABPC4	chr1	39555816	39581790
PABPC4_chr1_39555816_39581790	0/0	a0002	660	1	0	0	1	0	0	copy fasta	PABPC4	chr1	39555816	39581790
PABPC4_chr1_39555816_39581790	0/0	a0003	660	1	0	0	0	1	0	copy fasta	PABPC4	chr1	39555816	39581790
PABPC5_chrX_91429839_91443584	1/1	a0001	382	332	80	51	158	9	32	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/0	a0002	382	2	2	0	0	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/0	a0003	382	1	0	1	0	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPN1L_chr16_88858333_88871660	1/1	a0001	278	426	96	77	194	13	44	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	a0002	278	5	0	1	0	2	2	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	a0003	278	4	0	2	0	2	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	a0004	278	3	3	0	0	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	a0005	278	2	0	0	2	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	a0006	278	2	0	1	0	1	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	a0007	278	2	0	0	0	0	2	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	a0008	36	1	0	1	0	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	a0009	278	1	0	1	0	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	a0010	278	1	0	0	1	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	a0011	131	1	0	0	1	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	a0012	278	1	0	0	1	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	a0013	278	1	0	1	0	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	a0014	278	1	0	0	1	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	a0015	278	1	1	0	0	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1_chr14_23316457_23331163	1/1	a0001	306	427	100	78	187	18	42	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	a0002	306	1	0	0	1	0	0	copy fasta	PABPN1	chr14	23316457	23331163
PACC1_chr1_212358928_212419886	1/1	a0001	350	372	80	67	170	12	41	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	a0002	350	1	0	1	0	0	0	copy fasta	PACC1	chr1	212358928	212419886