JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PADI1_chr1_17200128_17251007	0/0	a0014	663	1	1	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI2_chr1_17061761_17124451	1/1	a0001	665	339	84	67	140	14	32	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	a0002	665	5	0	0	5	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	a0003	665	2	2	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	a0004	665	1	0	1	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	a0005	665	1	0	1	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	a0006	665	1	0	1	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	a0007	665	1	0	0	1	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	a0008	665	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	a0009	665	1	0	0	1	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	a0010	665	1	0	0	1	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	a0011	665	1	0	0	1	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	a0012	665	1	0	0	1	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	a0013	665	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI3_chr1_17244098_17289233	1/0	a0001	664	302	78	63	114	14	32	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/1	a0002	664	43	1	5	28	1	7	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	a0003	664	5	5	0	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	a0004	664	4	4	0	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	a0005	664	2	0	0	2	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	a0006	664	2	0	2	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	a0007	664	2	2	0	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	a0008	664	2	0	0	2	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	a0009	664	1	0	0	0	0	1	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	a0010	664	1	0	1	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	a0011	664	1	1	0	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	a0012	664	1	0	0	0	1	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	a0013	664	1	0	1	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	a0014	664	1	1	0	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI4_chr1_17303197_17369004	0/0	a0001	663	165	38	29	75	5	18	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	1/0	a0002	663	153	35	27	70	3	17	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	a0003	663	16	2	8	0	4	2	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	a0004	663	5	3	2	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	a0005	663	4	4	0	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	a0006	663	4	3	1	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	a0007	663	4	1	2	0	0	1	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	a0008	663	3	1	2	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	a0009	663	3	0	2	0	1	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	a0010	663	2	1	0	0	0	1	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	a0011	663	2	2	0	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	a0012	663	2	0	0	2	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/1	a0013	663	2	0	0	0	0	1	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	a0014	663	2	0	0	0	1	1	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	a0015	663	1	0	0	1	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	a0016	663	1	1	0	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	a0017	663	1	0	1	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	a0018	663	1	1	0	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	a0019	8	1	0	0	0	0	1	copy fasta	PADI4	chr1	17303197	17369004
PADI6_chr1_17367196_17406699	1/1	a0001	694	388	88	68	168	15	47	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	a0002	694	12	5	7	0	0	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	a0003	694	4	0	3	0	0	1	copy fasta	PADI6	chr1	17367196	17406699