JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PAGE4_chrX_49824303_49839264	0/0	a0002	102	1	0	0	1	0	0	copy fasta	PAGE4	chrX	49824303	49839264
PAGE5_chrX_55215346_55229108	1/1	a0001	110	295	77	52	129	7	28	copy fasta	PAGE5	chrX	55215346	55229108
PAGE5_chrX_55215346_55229108	0/0	a0002	110	3	3	0	0	0	0	copy fasta	PAGE5	chrX	55215346	55229108
PAGE5_chrX_55215346_55229108	0/0	a0003	110	1	0	0	1	0	0	copy fasta	PAGE5	chrX	55215346	55229108
PAGR1_chr16_29811152_29827489	1/1	a0001	254	328	76	48	156	16	30	copy fasta	PAGR1	chr16	29811152	29827489
PAH_chr12_102831889_102922244	0/0	a0001	452	300	95	72	89	12	32	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	a0002	452	9	0	0	9	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	a0003	452	1	1	0	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	a0004	452	1	0	1	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	a0005	452	1	0	1	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAICS_chr4_56431260_56469578	1/1	a0001	425	369	84	56	180	12	35	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	a0002	425	7	0	4	0	2	1	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	a0003	425	2	2	0	0	0	0	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	a0004	425	1	0	0	1	0	0	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	a0005	425	1	0	0	1	0	0	copy fasta	PAICS	chr4	56431260	56469578
PAIP1_chr5_43521267_43562077	1/1	a0001	479	346	86	69	127	16	46	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	a0002	479	1	0	0	1	0	0	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	a0003	479	1	1	0	0	0	0	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	a0004	479	1	1	0	0	0	0	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	a0005	479	1	0	1	0	0	0	copy fasta	PAIP1	chr5	43521267	43562077
PAIP2B_chr2_71177738_71232103	1/1	a0001	123	376	93	76	148	16	41	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	a0002	123	1	0	0	0	0	1	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	a0003	123	1	1	0	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2_chr5_139336854_139374717	1/1	a0001	127	344	84	62	144	16	36	copy fasta	PAIP2	chr5	139336854	139374717
PAK1IP1_chr6_10689972_10714782	1/1	a0001	392	242	82	56	54	14	34	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1IP1_chr6_10689972_10714782	0/0	a0002	392	9	8	1	0	0	0	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1IP1_chr6_10689972_10714782	0/0	a0003	392	5	0	5	0	0	0	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1_chr11_77317017_77479094	1/1	a0001	545	302	84	48	144	4	20	copy fasta	PAK1	chr11	77317017	77479094
PAK2_chr3_196734857_196837647	1/1	a0001	524	176	51	35	52	10	26	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	a0002	236	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	a0003	183	1	0	1	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK3_chrX_111091191_111232361	1/1	a0001	544	194	76	21	70	7	18	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	a0002	184	1	0	0	1	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK4_chr19_39120786_39184404	1/1	a0001	591	355	76	75	144	14	44	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	a0002	591	3	3	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	a0003	591	2	2	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	a0004	591	1	0	0	1	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	a0005	591	1	0	1	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	a0006	591	1	0	1	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	a0007	591	1	0	0	1	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	a0008	591	1	1	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	a0009	491	1	0	0	1	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	a0010	591	1	0	1	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	a0011	591	1	0	0	1	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK5_chr20_9532370_9844076	0/0	a0001	719	98	50	14	19	2	13	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	1/1	a0002	719	80	16	19	28	7	8	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	a0003	719	24	3	2	18	1	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	a0004	719	3	0	3	0	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	a0005	719	1	0	0	0	0	1	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	a0006	719	1	0	0	1	0	0	copy fasta	PAK5	chr20	9532370	9844076