JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARHGEF4_chr2_130831914_131052253	0/0	a0017	1876	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	a0018	1876	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	a0019	1876	1	0	0	1	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	a0020	1876	1	0	0	0	0	1	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	a0021	1876	1	0	0	0	0	1	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	a0022	1876	1	0	0	0	0	1	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	a0023	1876	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	a0024	1876	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	a0025	1876	1	0	1	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF5_chr7_144350402_144385632	1/0	a0001	1597	49	9	11	18	2	8	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0002	1597	47	1	15	24	1	6	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/1	a0003	1597	35	9	10	4	4	7	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0004	1597	25	1	11	2	4	7	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0005	1597	17	4	0	5	2	6	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0006	1597	17	2	1	11	2	1	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0007	1597	17	16	1	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0008	1597	11	9	1	0	1	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0009	10	9	1	1	7	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0010	1597	6	6	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0011	1597	5	3	0	2	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0012	1597	4	4	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0013	1597	3	0	0	3	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0014	1597	3	0	1	0	2	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0015	817	2	0	0	2	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0016	817	2	1	0	0	0	1	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0017	1597	2	0	2	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0018	1597	2	0	2	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0019	817	2	0	1	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0020	1597	2	1	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0021	1597	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0022	1597	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0023	1597	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0024	817	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0025	1597	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0026	817	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0027	817	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0028	1597	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0029	1597	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0030	817	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0031	1597	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0032	1597	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0033	817	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0034	1597	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0035	1597	1	0	0	0	0	1	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0036	817	1	0	0	0	0	1	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0037	817	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0038	817	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0039	1597	1	0	1	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0040	1597	1	0	1	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0041	1597	1	0	1	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632