JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PAK5_chr20_9532370_9844076	0/0	a0007	719	1	1	0	0	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK6_chr15_40234063_40282487	1/1	a0001	681	280	59	53	122	12	32	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	a0002	681	91	30	5	45	1	10	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	a0003	681	40	0	9	23	5	3	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	a0004	681	4	4	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	a0005	681	4	4	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	a0006	681	2	0	2	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	a0007	681	1	0	0	1	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	a0008	681	1	0	0	0	0	1	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	a0009	681	1	0	0	1	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	a0010	681	1	0	1	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	a0011	681	1	1	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PALB2_chr16_23598165_23646310	1/1	a0001	1186	242	40	53	110	12	25	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	a0002	1186	54	14	3	27	2	8	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	a0003	1186	11	11	0	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	a0004	1186	3	0	3	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	a0005	1186	3	3	0	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	a0006	1186	2	2	0	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	a0007	1186	1	1	0	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	a0008	1186	1	0	0	1	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	a0009	1186	1	0	1	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	a0010	1186	1	1	0	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	a0011	1186	1	1	0	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	a0012	1186	1	0	1	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	a0013	1186	1	0	1	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	a0014	1186	1	0	0	1	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	a0015	1186	1	1	0	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	a0016	1186	1	0	0	1	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	a0017	1186	1	0	0	0	0	1	copy fasta	PALB2	chr16	23598165	23646310
PALD1_chr10_70473767_70573450	1/1	a0001	856	162	66	33	26	5	30	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	a0002	856	53	0	9	37	3	4	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	a0003	856	38	0	11	24	3	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	a0004	856	16	2	6	1	1	6	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	a0005	856	7	2	0	4	0	1	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	a0006	856	5	4	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	a0007	856	4	1	3	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	a0008	856	4	3	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	a0009	856	3	1	2	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	a0010	856	2	2	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	a0011	422	2	2	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	a0012	856	1	1	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	a0013	856	1	0	0	1	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	a0014	856	1	0	0	0	0	1	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	a0015	856	1	1	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	a0016	856	1	0	0	0	0	1	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	a0017	856	1	0	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	a0018	856	1	0	0	0	0	1	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	a0019	856	1	0	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	a0020	856	1	0	0	1	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	a0021	856	1	0	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450