JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PALD1_chr10_70473767_70573450	0/0	a0022	856	1	1	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	a0023	856	1	0	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALLD_chr4_168492052_168933441	1/0	a0001	1123	97	35	26	18	3	14	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/1	a0002	1123	35	14	7	9	0	4	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	a0003	1123	11	3	2	4	0	2	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	a0004	1123	9	5	1	1	1	1	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	a0005	1123	1	1	0	0	0	0	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	a0006	1123	1	0	0	0	0	1	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	a0007	1123	1	1	0	0	0	0	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	a0008	1123	1	1	0	0	0	0	copy fasta	PALLD	chr4	168492052	168933441
PALM2AKAP2_chr9_109775198_110177512	0/1	a0001	1103	92	39	14	20	4	14	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	a0002	1103	72	13	10	37	4	8	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	a0003	1105	30	5	5	17	1	2	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	1/0	a0004	1103	9	1	3	0	1	3	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	a0005	1103	5	5	0	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	a0006	1103	3	2	1	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	a0007	1103	2	2	0	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	a0008	1103	2	2	0	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	a0009	1103	1	0	1	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	a0010	1103	1	0	0	0	0	1	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	a0011	1103	1	0	1	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	a0012	1103	1	1	0	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	a0013	1103	1	0	1	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	a0014	1103	1	0	0	1	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	a0015	1103	1	0	0	1	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM3_chr19_14048367_14067076	1/0	a0001	688	293	29	51	166	7	39	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	a0002	688	54	3	23	21	3	4	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	a0003	688	35	30	1	2	0	2	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	a0004	688	14	14	0	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	a0005	688	6	0	3	0	2	1	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	a0006	688	6	6	0	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	a0007	687	5	5	0	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	a0008	688	5	4	1	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	a0009	688	4	0	0	0	2	2	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	a0010	688	3	1	1	0	1	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/1	a0011	688	2	0	1	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	a0012	687	2	2	0	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	a0013	688	1	0	1	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	a0014	688	1	1	0	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	a0015	688	1	0	0	1	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	a0016	688	1	0	0	1	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	a0017	688	1	1	0	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	a0018	688	1	0	0	0	1	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	a0019	688	1	0	0	0	1	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	a0020	688	1	0	0	0	1	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	a0021	688	1	0	0	1	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALMD_chr1_99641113_99699535	1/1	a0001	551	356	76	66	162	12	38	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	a0002	551	7	7	0	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	a0003	551	5	5	0	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	a0004	551	3	2	1	0	0	0	copy fasta	PALMD	chr1	99641113	99699535