JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PALMD_chr1_99641113_99699535	0/0	a0005	551	2	0	1	0	0	1	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	a0006	551	2	0	2	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	a0007	551	1	0	0	0	0	1	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	a0008	551	1	1	0	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	a0009	551	1	1	0	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	a0010	551	1	1	0	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	a0011	551	1	1	0	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALM_chr19_703935_753329	0/0	a0001	387	219	67	32	89	4	27	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	1/1	a0002	387	181	23	48	77	12	19	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	a0003	387	1	0	0	1	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	a0004	387	1	1	0	0	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	a0005	387	1	0	0	1	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	a0006	387	1	1	0	0	0	0	copy fasta	PALM	chr19	703935	753329
PALS1_chr14_67236435_67341061	1/0	a0001	675	282	79	57	125	4	16	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	a0002	675	3	0	3	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	a0003	675	1	0	0	1	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	a0004	675	1	1	0	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/1	a0005	675	1	0	0	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	a0006	675	1	1	0	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	a0007	675	1	1	0	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS2_chr7_24568452_24699193	1/1	a0001	540	375	93	60	176	12	32	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	a0002	540	2	2	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	a0003	540	1	1	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PAM16_chr16_4335251_4356321	0/1	a0001	125	306	76	66	109	13	41	copy fasta	PAM16	chr16	4335251	4356321
PAM16_chr16_4335251_4356321	0/0	a0002	125	59	22	6	25	2	4	copy fasta	PAM16	chr16	4335251	4356321
PAM16_chr16_4335251_4356321	0/0	a0003	125	2	0	0	0	1	1	copy fasta	PAM16	chr16	4335251	4356321
PAMR1_chr11_35426827_35530616	1/1	a0001	720	323	54	61	162	10	34	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	a0002	720	23	16	2	0	1	4	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	a0003	720	10	6	4	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	a0004	720	3	0	0	3	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	a0005	720	3	3	0	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	a0006	720	2	2	0	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	a0007	720	1	0	0	1	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	a0008	720	1	1	0	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	a0009	720	1	1	0	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	a0010	720	1	1	0	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	a0011	720	1	0	0	1	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	a0012	720	1	1	0	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	a0013	720	1	0	0	1	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	a0014	720	1	0	0	1	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	a0015	720	1	0	0	1	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	a0016	720	1	0	1	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	a0017	720	1	1	0	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	a0018	720	1	1	0	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	a0019	720	1	0	0	0	1	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	a0020	720	1	1	0	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAM_chr5_102750305_103034716	1/1	a0001	973	178	64	30	62	2	18	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	a0002	973	2	0	2	0	0	0	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	a0003	973	2	1	0	1	0	0	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	a0004	973	2	2	0	0	0	0	copy fasta	PAM	chr5	102750305	103034716