JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PAM_chr5_102750305_103034716	0/0	a0005	973	1	0	1	0	0	0	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	a0006	973	1	1	0	0	0	0	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	a0007	973	1	0	1	0	0	0	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	a0008	973	1	0	0	1	0	0	copy fasta	PAM	chr5	102750305	103034716
PAN2_chr12_56311936_56339000	0/1	a0001	1198	279	31	47	150	16	34	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	1/0	a0002	1198	49	44	4	0	0	0	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	a0003	1198	3	0	0	3	0	0	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	a0004	1198	2	2	0	0	0	0	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	a0005	1198	1	1	0	0	0	0	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	a0006	1198	1	0	1	0	0	0	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	a0007	1198	1	0	0	1	0	0	copy fasta	PAN2	chr12	56311936	56339000
PAN3_chr13_28133545_28300335	1/1	a0001	887	250	79	34	108	2	25	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	a0002	887	1	0	0	0	0	1	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	a0003	887	1	1	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PANK1_chr10_89577988_89650242	1/1	a0001	461	366	92	74	136	14	48	copy fasta	PANK1	chr10	89577988	89650242
PANK2_chr20_3884387_3934887	0/1	a0001	447	351	93	68	149	9	31	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	1/0	a0002	447	64	0	5	45	3	10	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	a0003	447	2	0	0	2	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	a0004	25	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	a0005	422	1	0	0	0	0	1	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	a0006	447	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	a0007	447	1	0	1	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	a0008	447	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK3_chr5_168543495_168584368	1/1	a0001	370	414	97	77	186	16	36	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	a0002	370	2	1	1	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK4_chr1_2503537_2531596	0/0	a0001	773	168	59	22	72	3	12	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/1	a0002	773	119	31	25	41	5	16	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	a0003	773	103	2	17	64	4	16	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	a0004	773	2	0	2	0	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	a0005	773	2	0	2	0	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	a0006	773	1	0	0	1	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	a0007	773	1	1	0	0	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	a0008	773	1	1	0	0	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	a0009	773	1	0	0	1	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	a0010	773	1	0	0	1	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANX1_chr11_94123841_94186968	0/1	a0001	426	257	52	57	111	8	28	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	1/0	a0002	426	65	2	12	37	2	11	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	a0003	426	41	6	5	27	1	2	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	a0004	426	24	3	0	18	1	2	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	a0005	426	11	11	0	0	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	a0006	426	5	5	0	0	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	a0007	426	1	0	0	0	0	1	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	a0008	426	1	0	0	1	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	a0009	426	1	1	0	0	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	a0010	426	1	1	0	0	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	a0011	426	1	1	0	0	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX2_chr22_50165731_50185295	0/0	a0000	0	7	3	3	1	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	1/1	a0001	677	424	93	81	184	16	48	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	a0002	505	3	0	0	3	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	a0003	677	2	2	0	0	0	0	copy fasta	PANX2	chr22	50165731	50185295