JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PANX2_chr22_50165731_50185295	0/0	a0004	677	1	0	0	1	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	a0005	677	1	0	0	1	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	a0006	677	1	0	0	0	0	1	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	a0007	677	1	0	0	0	0	1	copy fasta	PANX2	chr22	50165731	50185295
PANX3_chr11_124606428_124625356	1/1	a0001	392	404	93	83	166	15	45	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	a0002	392	5	0	0	5	0	0	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	a0003	392	2	0	1	0	0	1	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	a0004	392	2	2	0	0	0	0	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	a0005	392	2	2	0	0	0	0	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	a0006	392	1	0	0	1	0	0	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	a0007	78	1	1	0	0	0	0	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	a0008	392	1	1	0	0	0	0	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	a0009	392	1	0	0	0	1	0	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	a0010	392	1	1	0	0	0	0	copy fasta	PANX3	chr11	124606428	124625356
PAOX_chr10_133374262_133396694	1/1	a0001	511	321	96	67	107	18	31	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	0/0	a0002	511	9	0	0	9	0	0	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	0/0	a0003	511	5	0	2	0	0	3	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	0/0	a0004	511	4	0	4	0	0	0	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	0/0	a0005	511	3	3	0	0	0	0	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	0/0	a0006	511	2	1	1	0	0	0	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	0/0	a0007	511	1	0	0	1	0	0	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	0/0	a0008	511	1	0	0	1	0	0	copy fasta	PAOX	chr10	133374262	133396694
PAPLN_chr14_73232506_73279623	0/1	a0001	1278	107	36	25	34	1	10	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	1/0	a0002	1278	86	6	22	40	9	8	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0003	1278	73	5	16	48	0	4	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0004	1278	23	0	2	15	1	5	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0005	1278	18	3	2	10	0	3	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0006	1278	17	0	3	14	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0007	1278	11	0	0	11	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0008	1278	7	6	0	0	0	1	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0009	1278	7	5	0	1	0	1	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0010	1278	7	0	2	1	2	2	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0011	1278	5	0	0	3	0	2	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0012	1278	5	5	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0013	1278	5	0	3	0	0	2	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0014	1278	4	4	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0015	1278	4	4	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0016	1278	3	0	0	3	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0017	1278	3	3	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0018	1278	3	0	1	0	1	1	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0019	1278	2	0	0	2	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0020	1278	2	0	0	0	0	2	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0021	1278	2	2	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0022	1278	2	2	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0023	1278	2	2	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0024	1278	2	0	2	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0025	1278	2	0	0	0	2	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0026	1278	1	1	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0027	1278	1	0	0	1	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0028	1278	1	0	0	1	0	0	copy fasta	PAPLN	chr14	73232506	73279623