JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PAPLN_chr14_73232506_73279623	0/0	a0029	1278	1	0	0	1	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0030	1278	1	1	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0031	1278	1	1	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0032	1278	1	0	0	0	0	1	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0033	1278	1	0	0	1	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0034	1278	1	0	1	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0035	1278	1	1	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0036	1278	1	1	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0037	1278	1	0	0	1	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0038	1278	1	0	1	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0039	1278	1	1	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0040	1278	1	1	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	a0041	1278	1	0	0	1	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPOLA_chr14_96497382_96572116	1/1	a0001	745	310	88	48	114	14	44	copy fasta	PAPOLA	chr14	96497382	96572116
PAPOLB_chr7_4852738_4867030	1/1	a0001	637	226	20	45	133	9	17	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	a0002	637	141	43	25	51	3	19	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	a0003	637	36	7	3	18	2	6	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	a0004	637	13	12	1	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	a0005	637	11	9	2	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	a0006	637	2	2	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	a0007	637	2	0	0	0	2	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	a0008	637	2	0	0	0	0	2	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	a0009	637	1	1	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	a0010	637	1	0	0	1	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	a0011	637	1	0	0	1	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	a0012	637	1	1	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	a0013	637	1	1	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLG_chr2_60751268_60807086	1/1	a0001	736	324	85	76	111	16	34	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	a0002	736	2	2	0	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	a0003	736	1	1	0	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	a0004	736	1	0	0	1	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPPA2_chr1_176458175_176850601	1/1	a0001	1791	101	51	16	6	9	17	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	a0002	1791	6	6	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	a0003	1791	4	4	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	a0004	1791	1	0	0	0	0	1	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	a0005	1791	1	0	0	0	1	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	a0006	1791	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	a0007	1791	1	0	0	0	0	1	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	a0008	1791	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	a0009	1791	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	a0010	1791	1	0	0	0	0	1	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA_chr9_116148791_116407321	0/0	a0001	1627	108	10	25	57	4	12	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	1/1	a0002	1627	86	37	18	18	4	7	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	a0003	1629	7	0	2	2	0	3	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	a0004	1627	4	0	0	0	0	4	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	a0005	1628	4	3	1	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	a0006	1627	3	3	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	a0007	1624	2	2	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	a0008	1628	2	1	1	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	a0009	1628	2	2	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321