JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PAPPA_chr9_116148791_116407321	0/0	a0010	1628	2	2	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	a0011	1629	2	0	0	1	0	1	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	a0012	1627	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	a0013	1627	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	a0014	1627	1	0	1	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	a0015	1627	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	a0016	1627	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	a0017	1627	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	a0018	1627	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	a0019	1627	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	a0020	1627	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	a0021	1628	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	a0022	1629	1	0	0	0	0	1	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	a0023	1628	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPSS1_chr4_107608666_107725234	1/1	a0001	624	273	76	48	107	10	30	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	a0002	624	1	1	0	0	0	0	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	a0003	624	1	1	0	0	0	0	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	a0004	624	1	0	0	1	0	0	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS2_chr10_87654878_87752705	1/1	a0001	619	361	87	62	166	12	32	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	a0002	619	3	3	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	a0003	619	2	1	0	1	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	a0004	619	2	0	2	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	a0005	619	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	a0006	619	1	0	0	1	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	a0007	619	1	0	0	1	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	a0008	619	1	0	0	1	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAQR3_chr4_78906878_78944438	1/1	a0001	311	331	84	50	146	12	37	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	a0002	311	1	1	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	a0003	311	1	0	0	0	0	1	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	a0004	311	1	1	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR4_chr16_2964348_2978484	1/1	a0001	273	411	98	78	177	18	38	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	a0002	273	1	0	0	1	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR5_chr15_69293912_69412780	1/1	a0001	330	224	71	32	98	6	15	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	a0002	330	60	19	10	30	0	1	copy fasta	PAQR5	chr15	69293912	69412780
PAQR6_chr1_156238320_156253056	1/1	a0001	344	399	90	79	167	16	45	copy fasta	PAQR6	chr1	156238320	156253056
PAQR6_chr1_156238320_156253056	0/0	a0002	344	1	0	1	0	0	0	copy fasta	PAQR6	chr1	156238320	156253056
PAQR6_chr1_156238320_156253056	0/0	a0003	344	1	0	0	0	0	1	copy fasta	PAQR6	chr1	156238320	156253056
PAQR6_chr1_156238320_156253056	0/0	a0004	344	1	0	0	1	0	0	copy fasta	PAQR6	chr1	156238320	156253056
PAQR7_chr1_25856484_25880708	1/1	a0001	346	331	71	63	146	12	37	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	a0002	346	25	22	3	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	a0003	346	2	0	0	2	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	a0004	346	1	1	0	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	a0005	346	1	0	1	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	a0006	346	1	0	0	0	0	1	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	a0007	346	1	0	1	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR8_chr6_52357151_52412777	1/1	a0001	354	388	90	75	164	17	40	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	a0002	354	1	0	0	0	1	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	a0003	354	1	0	1	0	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR9_chr3_142949585_142968674	1/1	a0001	377	431	83	72	210	18	46	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	a0002	377	13	11	0	2	0	0	copy fasta	PAQR9	chr3	142949585	142968674