JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PAQR9_chr3_142949585_142968674	0/0	a0003	377	1	0	1	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	a0004	377	1	0	1	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PARD3B_chr2_204540475_205625162	0/0	a0001	1205	14	14	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	a0002	1205	13	11	0	2	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	a0003	1205	8	7	1	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	a0004	1205	7	7	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	a0005	1205	2	1	1	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	a0006	1205	2	2	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	a0007	1205	2	2	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	a0008	1205	2	2	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	a0009	1205	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	a0010	1205	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	a0011	1205	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	a0012	1205	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3_chr10_34104561_34820296	1/1	a0001	1353	88	47	20	9	4	6	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	a0002	1353	4	4	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	a0003	1353	3	3	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	a0004	1353	2	2	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	a0005	1353	2	1	0	1	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	a0006	1353	1	1	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD6A_chr16_67655960_67667774	1/1	a0001	345	261	88	50	78	9	34	copy fasta	PARD6A	chr16	67655960	67667774
PARD6A_chr16_67655960_67667774	0/0	a0002	345	5	0	4	0	1	0	copy fasta	PARD6A	chr16	67655960	67667774
PARD6B_chr20_50726580_50758741	1/1	a0001	372	345	80	68	141	16	38	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	a0002	372	11	11	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	a0003	372	4	0	0	4	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	a0004	372	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	a0005	372	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	a0006	372	1	0	0	0	0	1	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	a0007	372	1	0	0	0	0	1	copy fasta	PARD6B	chr20	50726580	50758741
PARD6G_chr18_80152232_80252514	1/1	a0001	376	380	91	72	165	12	38	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	a0002	376	1	1	0	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	a0003	376	1	0	0	1	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARG_chr10_49813279_49947027	1/1	a0001	976	269	72	59	107	8	21	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	a0002	976	7	5	2	0	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	a0003	976	5	5	0	0	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	a0004	976	2	0	0	2	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	a0005	976	2	0	0	2	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	a0006	976	1	0	0	0	0	1	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	a0007	976	1	1	0	0	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	a0008	976	1	1	0	0	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	a0009	976	1	1	0	0	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	a0010	976	1	1	0	0	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	a0011	976	1	0	1	0	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	a0012	976	1	0	0	1	0	0	copy fasta	PARG	chr10	49813279	49947027
PARK7_chr1_7956711_7990505	1/1	a0001	189	369	94	68	153	18	34	copy fasta	PARK7	chr1	7956711	7990505
PARK7_chr1_7956711_7990505	0/0	a0002	189	1	0	0	1	0	0	copy fasta	PARK7	chr1	7956711	7990505
PARL_chr3_183824271_183889880	1/0	a0001	379	199	33	33	102	9	21	copy fasta	PARL	chr3	183824271	183889880
PARL_chr3_183824271_183889880	0/1	a0002	379	152	43	29	58	7	14	copy fasta	PARL	chr3	183824271	183889880
PARL_chr3_183824271_183889880	0/0	a0003	379	3	3	0	0	0	0	copy fasta	PARL	chr3	183824271	183889880
PARL_chr3_183824271_183889880	0/0	a0004	379	2	0	0	2	0	0	copy fasta	PARL	chr3	183824271	183889880