JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PARL_chr3_183824271_183889880	0/0	a0005	12	1	1	0	0	0	0	copy fasta	PARL	chr3	183824271	183889880
PARL_chr3_183824271_183889880	0/0	a0006	379	1	0	0	0	0	1	copy fasta	PARL	chr3	183824271	183889880
PARM1_chr4_74928116_75055113	1/1	a0001	310	136	44	29	52	3	6	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	a0002	310	52	23	12	7	1	9	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	a0003	310	1	0	1	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	a0004	310	1	0	0	0	0	1	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	a0005	310	1	0	0	1	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	a0006	310	1	1	0	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARN_chr16_14430701_14635260	0/1	a0001	639	166	58	31	45	9	22	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	a0002	639	1	0	0	0	1	0	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	a0003	639	1	0	1	0	0	0	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	a0004	639	1	0	0	1	0	0	copy fasta	PARN	chr16	14430701	14635260
PARP10_chr8_143972158_143991460	1/0	a0001	1025	165	5	41	98	6	14	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	a0002	1025	119	44	23	31	5	16	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/1	a0003	1025	37	5	14	5	2	10	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	a0004	1025	21	20	1	0	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	a0005	1025	15	13	1	0	0	1	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	a0006	1025	7	1	1	3	0	2	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	a0007	1025	3	3	0	0	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	a0008	1025	2	0	1	1	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	a0009	1025	2	0	0	2	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	a0010	1025	1	1	0	0	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	a0011	1025	1	1	0	0	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	a0012	1025	1	0	0	1	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	a0013	1025	1	1	0	0	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	a0014	1025	1	0	0	1	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	a0015	1025	1	0	0	1	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	a0016	1025	1	0	0	1	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	a0017	1025	1	0	0	0	1	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	a0018	1025	1	0	0	0	0	1	copy fasta	PARP10	chr8	143972158	143991460
PARP11_chr12_3803861_3878399	1/1	a0001	338	416	92	68	200	10	44	copy fasta	PARP11	chr12	3803861	3878399
PARP12_chr7_140018749_140067951	1/1	a0001	701	312	63	62	137	12	36	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	a0002	701	19	18	1	0	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	a0003	701	19	5	5	0	1	8	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	a0004	701	3	1	1	0	1	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	a0005	701	2	2	0	0	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	a0006	701	1	0	1	0	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	a0007	701	1	1	0	0	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	a0008	701	1	1	0	0	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	a0009	701	1	0	0	1	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	a0010	701	1	1	0	0	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP14_chr3_122675839_122735840	1/1	a0001	1801	299	70	44	126	13	44	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	a0002	1801	35	4	4	24	0	3	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	a0003	1801	10	3	6	0	1	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	a0004	1801	8	5	3	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	a0005	1801	4	3	1	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	a0006	1801	3	2	1	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	a0007	1801	1	0	0	0	0	1	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	a0008	1801	1	0	1	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	a0009	1801	1	0	0	1	0	0	copy fasta	PARP14	chr3	122675839	122735840