JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PARP14_chr3_122675839_122735840	0/0	a0010	1801	1	0	1	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	a0011	1801	1	1	0	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	a0012	1801	1	0	0	1	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	a0013	1801	1	0	1	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP15_chr3_122572650_122644047	1/0	a0001	678	107	19	29	25	10	23	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0002	678	45	3	6	31	2	3	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/1	a0003	678	43	8	13	15	2	4	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0004	678	40	1	3	29	1	6	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0005	678	32	6	8	9	1	8	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0006	678	22	1	2	17	0	2	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0007	678	12	9	0	3	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0008	678	7	7	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0009	678	6	3	0	3	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0010	678	5	4	1	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0011	678	4	4	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0012	678	4	4	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0013	678	3	1	2	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0014	678	3	3	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0015	678	2	2	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0016	678	1	0	1	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0017	678	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0018	678	1	0	0	1	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0019	678	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0020	678	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0021	678	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0022	678	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0023	678	1	0	0	1	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0024	514	1	0	0	1	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0025	678	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0026	678	1	0	0	1	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0027	678	1	0	1	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0028	678	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0029	678	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0030	678	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0031	678	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0032	678	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0033	678	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0034	678	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0035	678	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	a0036	678	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP16_chr15_65253099_65291883	1/1	a0001	322	310	85	64	123	14	22	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	a0002	322	2	0	2	0	0	0	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	a0003	322	2	0	0	2	0	0	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	a0004	322	1	1	0	0	0	0	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	a0005	322	1	0	0	1	0	0	copy fasta	PARP16	chr15	65253099	65291883
PARP1_chr1_226355691_226413093	1/1	a0001	1014	239	72	41	77	13	34	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	a0002	1014	88	0	22	58	3	5	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	a0003	1014	20	0	0	15	0	5	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	a0004	1014	2	0	0	2	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	a0005	1014	2	0	0	2	0	0	copy fasta	PARP1	chr1	226355691	226413093