JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARHGEF5_chr7_144350402_144385632	0/0	a0042	1597	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0043	817	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0044	817	1	0	1	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0045	1597	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0046	1597	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0047	1597	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	a0048	1597	1	0	1	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF6_chrX_136660550_136785932	1/1	a0001	776	239	64	45	98	7	23	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	a0002	776	2	2	0	0	0	0	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	a0003	776	2	2	0	0	0	0	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	a0004	776	1	0	0	1	0	0	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	a0005	776	1	0	0	0	0	1	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	a0006	479	1	0	0	1	0	0	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	a0007	756	1	0	0	1	0	0	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF7_chr13_111110310_111310732	1/1	a0001	862	267	83	59	83	14	26	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	a0002	862	2	2	0	0	0	0	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	a0003	862	1	0	0	1	0	0	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	a0004	862	1	0	0	0	0	1	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	a0005	862	1	0	1	0	0	0	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	a0006	862	1	0	0	0	0	1	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	a0007	862	1	1	0	0	0	0	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF9_chrX_63629967_63790214	1/1	a0001	523	166	47	29	67	5	16	copy fasta	ARHGEF9	chrX	63629967	63790214
ARHGEF9_chrX_63629967_63790214	0/0	a0002	499	1	0	0	1	0	0	copy fasta	ARHGEF9	chrX	63629967	63790214
ARHGEF9_chrX_63629967_63790214	0/0	a0003	523	1	1	0	0	0	0	copy fasta	ARHGEF9	chrX	63629967	63790214
ARID1A_chr1_26691015_26787104	1/1	a0001	2285	138	44	43	14	13	22	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	a0002	2285	2	0	0	0	0	2	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	a0003	2285	2	2	0	0	0	0	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	a0004	2285	2	2	0	0	0	0	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	a0005	2285	1	0	0	0	1	0	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	a0006	2285	1	0	1	0	0	0	copy fasta	ARID1A	chr1	26691015	26787104
ARID1B_chr6_156772378_157215779	1/1	a0001	2372	108	49	21	14	10	12	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0002	2372	6	6	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0003	2373	3	0	2	0	0	1	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0004	2373	3	3	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0005	2374	3	3	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0006	2373	2	0	2	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0007	2373	2	2	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0008	2372	2	2	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0009	2374	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0010	2372	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0011	2373	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0012	2372	1	0	0	0	0	1	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0013	2372	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0014	2372	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0015	2372	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0016	2372	1	0	0	1	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0017	2372	1	0	0	1	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0018	2372	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0019	2372	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0020	2373	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779