JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PARP1_chr1_226355691_226413093	0/0	a0006	1014	1	1	0	0	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	a0007	1014	1	0	1	0	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	a0008	1014	1	0	0	1	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	a0009	1014	1	0	1	0	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	a0010	1014	1	1	0	0	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	a0011	1014	1	0	1	0	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	a0012	1014	1	0	0	1	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP2_chr14_20338635_20362904	1/0	a0001	570	393	89	67	185	10	41	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/1	a0002	570	9	2	4	0	1	1	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	a0003	570	4	0	0	4	0	0	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	a0004	570	3	3	0	0	0	0	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	a0005	570	3	0	0	3	0	0	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	a0006	570	3	0	0	3	0	0	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	a0007	570	2	2	0	0	0	0	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	a0008	570	1	0	1	0	0	0	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	a0009	570	1	0	0	1	0	0	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	a0010	570	1	0	0	0	1	0	copy fasta	PARP2	chr14	20338635	20362904
PARP3_chr3_51937363_51953867	1/1	a0001	533	339	58	70	168	8	33	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	a0002	533	12	12	0	0	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	a0003	533	10	6	4	0	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	a0004	533	8	8	0	0	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	a0005	533	5	0	0	4	0	1	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	a0006	533	1	0	0	1	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	a0007	533	1	1	0	0	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	a0008	533	1	0	0	1	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	a0009	533	1	1	0	0	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	a0010	533	1	0	1	0	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	a0011	533	1	0	1	0	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP4_chr13_24415931_24517778	0/0	a0001	1724	101	11	27	46	6	11	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/1	a0002	1724	86	10	25	37	5	8	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0003	1724	55	5	5	40	0	5	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	1/0	a0004	1724	19	12	0	4	1	1	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0005	1724	12	12	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0006	1724	7	0	5	0	2	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0007	1724	7	0	0	7	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0008	1724	6	0	0	5	0	1	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0009	1724	6	5	1	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0010	1724	5	5	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0011	1724	5	5	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0012	1724	5	5	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0013	1724	4	2	2	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0014	1724	4	4	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0015	1724	3	3	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0016	1724	3	3	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0017	1724	3	0	1	0	2	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0018	1724	2	0	0	2	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0019	1724	2	0	1	0	0	1	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0020	1724	1	1	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0021	1129	1	0	1	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0022	1724	1	1	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778