JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PARP4_chr13_24415931_24517778	0/0	a0023	1724	1	1	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0024	1724	1	1	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0025	1724	1	1	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0026	1724	1	1	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0027	1724	1	1	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0028	1724	1	0	0	1	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0029	1724	1	0	0	1	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0030	1724	1	1	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0031	1724	1	1	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0032	1724	1	0	0	0	0	1	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0033	1724	1	1	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0034	1724	1	1	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0035	1724	1	0	0	0	0	1	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0036	1724	1	0	0	1	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0037	1724	1	1	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0038	1724	1	1	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0039	1724	1	0	0	0	0	1	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0040	1724	1	1	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0041	1724	1	1	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0042	1724	1	0	1	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0043	1724	1	1	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0044	1724	1	1	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0045	1724	1	1	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	a0046	1724	1	0	1	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP6_chr15_72236181_72277554	1/1	a0001	630	395	98	72	187	8	28	copy fasta	PARP6	chr15	72236181	72277554
PARP6_chr15_72236181_72277554	0/0	a0002	630	1	0	0	1	0	0	copy fasta	PARP6	chr15	72236181	72277554
PARP8_chr5_50661637_50851519	1/1	a0001	854	320	92	55	121	8	42	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	a0002	854	6	0	0	6	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	a0003	854	1	0	0	1	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	a0004	854	1	0	1	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP9_chr3_122522924_122569300	0/1	a0001	819	202	23	30	117	8	23	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	1/0	a0002	819	184	59	37	66	6	15	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	a0003	819	34	6	10	11	2	5	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	a0004	819	6	6	0	0	0	0	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	a0005	819	3	2	1	0	0	0	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	a0006	819	1	0	0	1	0	0	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	a0007	819	1	1	0	0	0	0	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	a0008	819	1	0	0	1	0	0	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	a0009	819	1	0	0	1	0	0	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	a0010	661	1	0	0	1	0	0	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	a0011	819	1	0	0	0	0	1	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	a0012	819	1	1	0	0	0	0	copy fasta	PARP9	chr3	122522924	122569300
PARPBP_chr12_102115183_102202520	1/1	a0001	579	331	84	56	156	7	26	copy fasta	PARPBP	chr12	102115183	102202520
PARPBP_chr12_102115183_102202520	0/0	a0002	579	6	5	0	0	1	0	copy fasta	PARPBP	chr12	102115183	102202520
PARPBP_chr12_102115183_102202520	0/0	a0003	579	4	4	0	0	0	0	copy fasta	PARPBP	chr12	102115183	102202520
PARPBP_chr12_102115183_102202520	0/0	a0004	579	2	0	0	2	0	0	copy fasta	PARPBP	chr12	102115183	102202520
PARPBP_chr12_102115183_102202520	0/0	a0005	579	1	1	0	0	0	0	copy fasta	PARPBP	chr12	102115183	102202520
PARS2_chr1_54751898_54769523	1/1	a0001	475	348	77	61	156	18	34	copy fasta	PARS2	chr1	54751898	54769523
PARS2_chr1_54751898_54769523	0/0	a0002	475	57	5	8	36	0	8	copy fasta	PARS2	chr1	54751898	54769523
PARS2_chr1_54751898_54769523	0/0	a0003	475	5	4	1	0	0	0	copy fasta	PARS2	chr1	54751898	54769523